Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   BBH88_RS00525 Genome accession   NZ_CP016534
Coordinates   108168..109544 (+) Length   458 a.a.
NCBI ID   WP_006828893.1    Uniprot ID   A0A1C7DCQ5
Organism   Planococcus antarcticus DSM 14505     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 103168..114544
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BBH88_RS00505 (BBH88_02580) - 103550..104020 (+) 471 WP_006828889.1 CtsR family transcriptional regulator -
  BBH88_RS00510 (BBH88_02575) - 104033..104566 (+) 534 WP_006828890.1 UvrB/UvrC motif-containing protein -
  BBH88_RS00515 (BBH88_02570) - 104556..105647 (+) 1092 WP_006828891.1 protein arginine kinase -
  BBH88_RS00520 (BBH88_02565) - 105644..108103 (+) 2460 WP_040851970.1 ATP-dependent Clp protease ATP-binding subunit -
  BBH88_RS00525 (BBH88_02560) radA 108168..109544 (+) 1377 WP_006828893.1 DNA repair protein RadA Machinery gene
  BBH88_RS00530 (BBH88_02555) - 109637..110731 (+) 1095 WP_065536320.1 PIN/TRAM domain-containing protein -
  BBH88_RS00535 (BBH88_02550) ispD 110747..111442 (+) 696 WP_006828895.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  BBH88_RS00540 (BBH88_02545) ispF 111439..111939 (+) 501 WP_006828896.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  BBH88_RS00545 (BBH88_02540) gltX 111981..113444 (+) 1464 WP_065536319.1 glutamate--tRNA ligase -
  BBH88_RS00550 (BBH88_02535) epsC 113761..114423 (+) 663 WP_065536318.1 serine O-acetyltransferase EpsC -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 49879.28 Da        Isoelectric Point: 6.4242

>NTDB_id=188869 BBH88_RS00525 WP_006828893.1 108168..109544(+) (radA) [Planococcus antarcticus DSM 14505]
MAKKKTKFICQSCGYESARWMGKCPGCASWNTMTEEVEVAVPKGTRGAFQHSVSAPQKATPINAIETQDEPRVETELSEL
NRVLGGGIVPGSLVLIGGDPGIGKSTLLLQVSAMLANSGNRVLYISGEESIRQTKLRAERLDASSSELFIYAETNLELIH
HTIEDVAPDFVIVDSIQTVHHPEVTSAPGSVTQVRESTAELMRIAKTKNIAIFLVGHVTKEGQIAGPRILEHMVDTVLYF
EGERHHTYRILRSVKNRFGSTNEIAIFEMLQGGLKEVLNPSELFLQERSSGSAGSTVVASMEGTRPILVEIQALVTPSSF
NYPKRMATGIDVNRVTLLMAVLEKRVGMLLQAQDAYIKVAGGVKLDEPAIDLAVLASIVSSFRDKAPNVYDCIIGEVGLT
GEVRRVSRIEQRVQEAAKLGFKRAIIPASNLGGWDYPEGIRVVGVESVNDALKEIFPQ

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=188869 BBH88_RS00525 WP_006828893.1 108168..109544(+) (radA) [Planococcus antarcticus DSM 14505]
ATGGCCAAGAAAAAAACAAAATTCATTTGTCAGTCATGTGGCTATGAATCGGCTAGATGGATGGGGAAATGTCCAGGTTG
TGCATCATGGAATACGATGACTGAAGAAGTAGAAGTGGCTGTTCCTAAAGGGACTCGTGGTGCTTTTCAGCATAGTGTGT
CGGCTCCACAAAAAGCGACACCGATTAATGCCATTGAAACGCAGGATGAACCACGGGTAGAAACCGAACTTAGTGAATTG
AATCGTGTTCTTGGCGGCGGTATTGTTCCTGGATCACTAGTGCTCATTGGGGGAGACCCAGGTATAGGGAAATCCACATT
ACTTTTACAAGTTTCAGCTATGCTTGCAAATAGTGGAAACCGGGTATTATATATTTCCGGAGAAGAGTCTATTCGACAGA
CTAAATTGCGCGCAGAACGTTTAGATGCGTCGTCTTCCGAACTGTTTATTTATGCAGAAACGAATCTTGAACTGATTCAT
CACACCATTGAAGATGTAGCACCTGACTTTGTGATTGTCGATTCAATTCAGACGGTTCATCATCCCGAAGTGACTTCTGC
ACCTGGCAGTGTGACTCAGGTGAGAGAAAGTACCGCAGAATTAATGCGGATTGCGAAAACGAAGAATATTGCTATTTTCC
TCGTAGGCCACGTTACAAAAGAAGGTCAAATTGCAGGACCGCGGATTTTGGAGCATATGGTCGATACGGTGCTGTATTTT
GAAGGCGAACGTCATCATACGTACCGGATTTTACGTAGTGTCAAAAACCGTTTTGGCTCAACGAATGAAATTGCCATTTT
TGAGATGCTTCAAGGTGGATTGAAAGAAGTGCTGAACCCGTCTGAACTATTTTTGCAAGAGCGTTCGAGCGGTTCGGCAG
GCTCAACAGTAGTCGCATCAATGGAAGGTACGCGACCGATTTTGGTCGAGATCCAAGCATTGGTGACACCTTCCAGTTTT
AATTATCCAAAACGTATGGCGACAGGAATTGACGTCAATCGTGTCACGCTATTAATGGCAGTGTTAGAAAAGCGAGTGGG
AATGTTGCTGCAAGCGCAAGACGCGTACATCAAAGTCGCAGGTGGCGTAAAACTCGACGAGCCGGCCATCGATTTAGCTG
TGCTGGCGAGTATTGTTTCTAGTTTCCGAGACAAGGCTCCAAACGTTTACGACTGCATTATCGGTGAAGTTGGATTGACT
GGTGAAGTAAGACGGGTATCGCGTATTGAACAGCGAGTTCAAGAAGCGGCTAAACTTGGATTCAAGCGTGCCATTATTCC
TGCATCAAATTTAGGTGGCTGGGATTATCCGGAAGGAATTCGTGTAGTCGGTGTAGAAAGTGTTAACGATGCATTAAAAG
AGATTTTTCCACAGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(68-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(352-433)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C7DCQ5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

72.848

98.908

0.721
  radA Streptococcus pneumoniae Rx1

61.842

99.563

0.616
  radA Streptococcus pneumoniae D39

61.842

99.563

0.616
  radA Streptococcus pneumoniae R6

61.842

99.563

0.616
  radA Streptococcus pneumoniae TIGR4

61.842

99.563

0.616
  radA Streptococcus mitis NCTC 12261

61.842

99.563

0.616
  radA Streptococcus mitis SK321

61.842

99.563

0.616

Multiple sequence alignment