Detailed information    

insolico Bioinformatically predicted

Overview

Name   oppD   Type   Regulator
Locus tag   BBP08_RS08285 Genome accession   NZ_CP016501
Coordinates   1637620..1638666 (-) Length   348 a.a.
NCBI ID   WP_000410288.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain WC1535     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1632620..1643666
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BBP08_RS08280 (BBP08_07990) amiF 1636688..1637620 (-) 933 WP_000138506.1 ABC transporter ATP-binding protein Regulator
  BBP08_RS08285 (BBP08_07995) oppD 1637620..1638666 (-) 1047 WP_000410288.1 ABC transporter ATP-binding protein Regulator
  BBP08_RS08290 (BBP08_08000) - 1638679..1639710 (-) 1032 WP_000764052.1 ABC transporter permease -
  BBP08_RS08295 (BBP08_08005) - 1639720..1640634 (-) 915 WP_000598965.1 ABC transporter permease -
  BBP08_RS08300 (BBP08_08010) - 1640753..1642408 (-) 1656 WP_001118749.1 peptide ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 38731.22 Da        Isoelectric Point: 4.7644

>NTDB_id=188645 BBP08_RS08285 WP_000410288.1 1637620..1638666(-) (oppD) [Streptococcus agalactiae strain WC1535]
MEKETILSVNNLHVDFHTYAGEVKAIRDVNFELKKGETLAIVGESGSGKSVTTRTLIGLNAKNSEISGNVQFKGRNLVEL
SEEEWTKVRGNEISMIFQDPMTSLDPTMKIGMQIAEPMMIHQKISKKDALKLALELMKDVGIPNAEEHINDYPHQWSGGM
RQRAVIAIALAADPEILIADEPTTALDVTIQAQILNLMKKIQAERDSSIVFITHDLGVVAGMADRVAVMYAGKIVEFGTV
DEVFYNPQHPYTWGLLNSMPTTDTESGSLESIPGTPPDLLTPPKGDAFAARNEFALDIDHEEEPPYFKVSETHFAATWLL
DERSPKVLPPLPIQKRWEKWNEIEGRKA

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=188645 BBP08_RS08285 WP_000410288.1 1637620..1638666(-) (oppD) [Streptococcus agalactiae strain WC1535]
ATGGAAAAAGAAACTATTTTAAGTGTTAATAATCTTCATGTTGACTTCCACACATATGCTGGAGAAGTAAAAGCAATTCG
TGATGTCAACTTTGAATTAAAAAAAGGTGAGACTCTTGCAATCGTTGGTGAATCTGGTTCAGGAAAATCTGTAACTACCA
GAACTTTAATTGGTTTAAATGCTAAAAATTCAGAGATATCAGGGAATGTTCAATTTAAGGGGCGTAACCTTGTTGAACTA
TCAGAAGAAGAGTGGACTAAGGTACGCGGGAATGAGATTTCTATGATTTTCCAAGACCCTATGACTAGTTTGGATCCAAC
GATGAAAATTGGCATGCAAATAGCAGAACCAATGATGATTCATCAAAAAATTTCAAAAAAGGATGCTTTAAAATTAGCTC
TTGAGCTAATGAAAGATGTAGGTATCCCAAATGCTGAAGAGCATATTAATGATTACCCACATCAGTGGTCTGGAGGAATG
CGCCAACGTGCGGTTATAGCGATTGCTTTAGCTGCTGATCCTGAAATTCTTATTGCTGATGAACCAACGACTGCTTTAGA
TGTAACAATTCAAGCACAAATTTTGAACTTAATGAAAAAAATTCAAGCAGAACGAGACTCCTCCATTGTTTTCATAACTC
ATGACTTAGGGGTCGTTGCAGGGATGGCAGACCGTGTAGCAGTTATGTATGCAGGGAAAATTGTTGAATTTGGAACTGTT
GATGAAGTCTTTTATAATCCACAACATCCATATACTTGGGGATTATTGAATTCAATGCCGACAACCGACACAGAATCAGG
TAGTTTAGAGTCAATTCCGGGAACACCACCAGATTTGTTGACCCCACCTAAAGGAGATGCATTTGCAGCTCGTAATGAAT
TTGCATTAGATATTGATCATGAAGAAGAACCACCGTACTTCAAAGTTTCAGAAACACATTTCGCTGCTACATGGCTTTTA
GATGAAAGATCACCTAAGGTGCTTCCTCCATTACCGATCCAAAAACGTTGGGAAAAATGGAACGAGATTGAAGGGAGGAA
AGCCTAA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(235-297)

ABC transporter (ABC_tran)

(27-183)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  oppD Streptococcus mutans UA159

78.963

99.713

0.787
  amiE Streptococcus salivarius strain HSISS4

55.457

97.414

0.54
  amiE Streptococcus thermophilus LMG 18311

54.867

97.414

0.534
  amiE Streptococcus thermophilus LMD-9

54.867

97.414

0.534

Multiple sequence alignment