Detailed information NTG0188636

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: E613_RS07460
• Genome accession: NZ_CP020603
• Coordinates: 1470521..1471525 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain E6130952
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1465521..1476525

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
E613_RS07430 (E613_14140)	fghA	1465613..1466464 (+)	852	WP_003092349.1	S-formylglutathione hydrolase	-
E613_RS07435 (E613_14150)	ispF	1466535..1467008 (+)	474	WP_003092346.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
E613_RS07440 (E613_14160)	truD	1467005..1468072 (+)	1068	WP_003092343.1	tRNA pseudouridine(13) synthase TruD	-
E613_RS07445 (E613_14170)	surE	1468060..1468809 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
E613_RS07450 (E613_14180)	-	1468842..1469477 (+)	636	WP_073660134.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
E613_RS07455 (E613_14190)	-	1469523..1470416 (+)	894	WP_003092335.1	peptidoglycan DD-metalloendopeptidase family protein	-
E613_RS07460 (E613_14200)	rpoS	1470521..1471525 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
E613_RS07465 (E613_14220)	fdxA	1471952..1472275 (-)	324	WP_003092272.1	ferredoxin FdxA	-
E613_RS07470 (E613_14230)	mutS	1472342..1474909 (-)	2568	WP_003122151.1	DNA mismatch repair protein MutS	-
E613_RS07480 (E613_14240)	-	1475035..1476042 (-)	1008	WP_003092265.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=188636 E613_RS07460 WP_003113871.1 1470521..1471525(+) (rpoS) [Pseudomonas aeruginosa strain E6130952]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=188636 E613_RS07460 WP_003113871.1 1470521..1471525(+) (rpoS) [Pseudomonas aeruginosa strain E6130952]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTTAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGATCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAACGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653