Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   BB562_RS09755 Genome accession   NZ_CP016491
Coordinates   2051779..2053473 (-) Length   564 a.a.
NCBI ID   WP_101873599.1    Uniprot ID   A0AAW8W156
Organism   Lactiplantibacillus pentosus strain BGM48     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2046779..2058473
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BB562_RS09730 (BB562_09370) - 2047341..2047676 (+) 336 WP_101873596.1 hypothetical protein -
  BB562_RS09735 (BB562_09375) - 2047842..2048495 (-) 654 WP_003638609.1 ABC transporter permease -
  BB562_RS09740 (BB562_09380) - 2048495..2049430 (-) 936 WP_101873597.1 osmoprotectant ABC transporter substrate-binding protein -
  BB562_RS09745 (BB562_09385) - 2049445..2050074 (-) 630 WP_050338774.1 ABC transporter permease -
  BB562_RS09750 (BB562_09390) - 2050071..2051255 (-) 1185 WP_231122093.1 betaine/proline/choline family ABC transporter ATP-binding protein -
  BB562_RS09755 (BB562_09395) recN 2051779..2053473 (-) 1695 WP_101873599.1 DNA repair protein RecN Machinery gene
  BB562_RS09760 (BB562_09400) - 2053570..2054028 (-) 459 WP_021336444.1 arginine repressor -
  BB562_RS09765 (BB562_09405) - 2054112..2054930 (-) 819 WP_050338777.1 TlyA family RNA methyltransferase -
  BB562_RS09770 (BB562_09410) - 2054943..2055833 (-) 891 WP_101873600.1 polyprenyl synthetase family protein -
  BB562_RS09775 (BB562_09415) - 2055826..2056056 (-) 231 WP_003638601.1 exodeoxyribonuclease VII small subunit -
  BB562_RS09780 (BB562_09420) xseA 2056056..2057399 (-) 1344 WP_101873601.1 exodeoxyribonuclease VII large subunit -
  BB562_RS09785 (BB562_09425) - 2057392..2058252 (-) 861 WP_101873602.1 bifunctional 5,10-methylenetetrahydrofolate dehydrogenase/5,10-methenyltetrahydrofolate cyclohydrolase -

Sequence

Protein


Download         Length: 564 a.a.        Molecular weight: 62757.19 Da        Isoelectric Point: 4.9335

>NTDB_id=188564 BB562_RS09755 WP_101873599.1 2051779..2053473(-) (recN) [Lactiplantibacillus pentosus strain BGM48]
MLQELSITNFAIIEHLDIAFEAGMTVLTGETGAGKSIIIDAVGLLAGGRGSSEFIRTGADKAVLQGMFILPADGVTAQLL
DEAGIDHADNTVILQREITKSGRNTCRINGMLVNTTTLKQIGETIVDIHGQNEHQELMQPEKHLGLLDEFAAAKIRKLKQ
QYQQQYDHYQQLNRELRQKNANEKEWAQRLDMLNFQVDEIAAAQVKVGEEAALIAERDRLDNYQMINQALQQSYTLLAAG
EETTGAVDMVGTAMNALEPIANLDSAFNEITVNVKNAFYGLQDAAGQISNQLDLQEFDEGRLDEIEQRLDVLSQLKRKYG
DSEQQILDYYQKIAAELAKMTDSEENSEDLAQRVTDAKDKLLKTGEALSDKRRTAAKVLQRQIHQELKDLYMDKAVFEVR
FKPTKGQIYRSGLDSVEFYIQTNPGERMRPLAKIASGGELSRMMLALKTIFSESQGITSIIFDEVDTGVSGRVAQAIAEK
INGIAHFSQVLCITHLPQVAAMSDHHYFIAKKITGKRTKTSVTKLDNAARVKELARMLAGTKVTKLSLEHAEELLQLADE
EKDE

Nucleotide


Download         Length: 1695 bp        

>NTDB_id=188564 BB562_RS09755 WP_101873599.1 2051779..2053473(-) (recN) [Lactiplantibacillus pentosus strain BGM48]
GTGTTACAAGAACTATCGATTACGAATTTTGCAATTATTGAACATTTAGATATTGCCTTTGAAGCTGGGATGACAGTTTT
GACTGGTGAGACGGGTGCTGGTAAATCGATTATTATTGATGCGGTCGGCCTGTTAGCAGGTGGCCGCGGTTCATCAGAAT
TTATTCGGACGGGCGCGGATAAAGCTGTCTTACAAGGGATGTTTATTTTGCCGGCGGACGGCGTCACGGCTCAGCTGCTA
GATGAAGCAGGAATCGACCATGCTGACAATACGGTGATTTTACAACGCGAAATCACGAAGAGTGGCCGTAACACTTGTCG
AATTAATGGCATGCTGGTGAATACGACGACTTTGAAGCAAATTGGTGAAACGATTGTTGATATTCATGGACAAAACGAAC
ATCAAGAGTTGATGCAACCAGAAAAGCATTTAGGGCTATTAGATGAATTTGCTGCGGCCAAGATTCGGAAGTTAAAGCAG
CAGTATCAGCAACAGTATGATCACTATCAGCAATTAAATCGCGAATTACGACAGAAAAATGCGAATGAAAAAGAATGGGC
ACAACGCTTAGACATGCTGAATTTTCAGGTTGATGAAATCGCGGCTGCCCAAGTTAAAGTCGGTGAAGAGGCGGCGCTGA
TTGCTGAACGGGATCGGCTTGATAACTATCAAATGATCAATCAGGCGTTGCAACAAAGCTATACGTTGTTAGCTGCTGGC
GAGGAAACGACTGGAGCTGTCGACATGGTTGGGACGGCGATGAATGCGTTGGAGCCGATTGCCAATTTGGATTCGGCGTT
CAATGAAATCACGGTCAATGTCAAGAATGCCTTTTATGGCTTGCAAGATGCTGCTGGGCAGATCTCAAACCAGTTAGACT
TACAGGAATTCGATGAAGGTCGGCTAGATGAAATCGAGCAACGCCTAGATGTGTTGAGCCAATTGAAACGCAAGTACGGT
GATTCAGAACAACAAATTCTCGATTATTATCAAAAAATTGCCGCTGAGCTCGCCAAAATGACTGACTCTGAAGAAAATAG
TGAAGATCTCGCACAACGGGTGACCGATGCCAAAGACAAACTGTTGAAGACGGGTGAGGCTTTGTCAGATAAGCGGCGCA
CGGCTGCCAAAGTCCTACAACGCCAGATTCATCAAGAGCTCAAAGATTTGTATATGGACAAGGCCGTTTTCGAAGTCCGG
TTTAAGCCGACCAAAGGCCAAATCTATCGGAGTGGGTTAGATAGTGTCGAATTTTACATTCAAACCAATCCGGGTGAGCG
CATGCGACCACTGGCTAAGATTGCTTCTGGTGGGGAGCTCTCACGGATGATGCTAGCACTCAAGACGATTTTCTCAGAAT
CACAAGGAATCACCAGTATTATCTTCGACGAAGTGGATACCGGGGTCAGTGGTCGGGTCGCACAAGCGATTGCTGAAAAA
ATCAACGGAATTGCACACTTTTCACAAGTGCTATGTATCACGCATCTCCCACAAGTGGCGGCCATGAGTGATCATCATTA
CTTCATTGCGAAAAAGATCACCGGCAAACGCACCAAGACGAGTGTGACCAAGTTGGATAATGCCGCTCGGGTGAAAGAAT
TGGCTCGGATGTTGGCCGGTACGAAGGTGACTAAGCTATCATTGGAACACGCTGAGGAGCTGTTACAGCTAGCTGATGAA
GAAAAGGACGAATGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-511)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

46.724

100

0.48

Multiple sequence alignment