Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   AWQ24_RS09770 Genome accession   NZ_CP016483
Coordinates   2008540..2010102 (+) Length   520 a.a.
NCBI ID   WP_065716709.1    Uniprot ID   -
Organism   Picosynechococcus sp. PCC 8807     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2003540..2015102
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AWQ24_RS09745 (AWQ24_09745) rpmF 2004256..2004423 (-) 168 WP_012307503.1 50S ribosomal protein L32 -
  AWQ24_RS09750 (AWQ24_09750) - 2004636..2005736 (+) 1101 WP_030006411.1 DUF389 domain-containing protein -
  AWQ24_RS09755 (AWQ24_09755) pstB 2006081..2006884 (+) 804 WP_012307505.1 phosphate ABC transporter ATP-binding protein PstB -
  AWQ24_RS09760 (AWQ24_09760) - 2007179..2007655 (+) 477 WP_012307506.1 FHA domain-containing protein -
  AWQ24_RS09765 (AWQ24_09765) - 2007712..2008506 (+) 795 WP_012307507.1 TIGR03943 family putative permease subunit -
  AWQ24_RS09770 (AWQ24_09770) comA 2008540..2010102 (+) 1563 WP_065716709.1 phospholipase D-like domain-containing protein Machinery gene
  AWQ24_RS09775 (AWQ24_09775) - 2010158..2010946 (+) 789 WP_065716710.1 tetratricopeptide repeat protein -
  AWQ24_RS09780 (AWQ24_09780) recQ 2010958..2013096 (-) 2139 WP_065716711.1 DNA helicase RecQ -
  AWQ24_RS09785 (AWQ24_09785) - 2013119..2013754 (-) 636 WP_012307511.1 exopolysaccharide biosynthesis protein -

Sequence

Protein


Download         Length: 520 a.a.        Molecular weight: 56735.77 Da        Isoelectric Point: 4.6096

>NTDB_id=188545 AWQ24_RS09770 WP_065716709.1 2008540..2010102(+) (comA) [Picosynechococcus sp. PCC 8807]
MVNPAARRPFFAFWGLLAVGLLGCQGGRGRSPQDESIQVYFNQRQGRRISYTEPYRQLKRPGDNLEAILIEGINSAQSTI
DIAIQELNLPLVAEALADQAAAGITIRVIVENNYRQPWATPDSAEILELDERDQGKYQEFVALADENQDGFLDAAETAKY
DAIAILERAKIPILDDTADGSKGSGLMHHKFMVVDGETVITGSANWTLSGIHGDFANPETRGNVNHLMRIQDAAIAQVFT
AEFEEMWTGRKFGVQKLQEPPQTFSVGNSRVTVQFSPFSSSQPWENTSNGLIGSTLAQAQESISLALFVFSEQKIANILE
KEAQAGTEIRALIDPSFAFREYSDGLDLLGVNLKEKCDPFNRPWANPIQTVGTPKLPKGDKFHHKFAVIDGKTVITGSHN
WSAAANNQNDETLLIIQNEAIAQQFQAEFDQFYTTAYLGIPPFIASKQKPIPADCTVAATDGPVNLNTASAVELETLPGI
GPSLAQGIIEGRPYSGLTDLQRVSGIGEKKAADLAGKVTW

Nucleotide


Download         Length: 1563 bp        

>NTDB_id=188545 AWQ24_RS09770 WP_065716709.1 2008540..2010102(+) (comA) [Picosynechococcus sp. PCC 8807]
ATGGTTAATCCCGCCGCTCGCCGCCCATTTTTCGCTTTTTGGGGTCTGTTGGCCGTTGGTCTGCTGGGTTGCCAGGGGGG
AAGGGGGCGATCGCCCCAGGATGAATCCATTCAAGTGTATTTCAATCAGCGTCAAGGCCGACGTATTAGTTACACCGAAC
CCTACCGCCAACTGAAACGCCCAGGGGATAACCTCGAAGCTATTCTAATCGAGGGCATTAACAGTGCCCAAAGCACCATC
GATATTGCGATTCAGGAGTTGAACTTGCCCCTGGTAGCTGAAGCTCTGGCCGACCAAGCCGCTGCGGGAATCACAATTCG
CGTCATCGTCGAAAATAATTATCGTCAACCCTGGGCCACACCTGATTCGGCAGAAATTTTAGAACTCGATGAACGGGATC
AGGGAAAATACCAAGAATTTGTCGCCCTCGCCGACGAAAACCAAGATGGCTTTTTGGATGCGGCAGAGACGGCTAAATAT
GATGCGATCGCCATTCTAGAACGGGCAAAGATTCCGATTTTGGACGACACCGCCGACGGTTCCAAAGGGAGCGGCCTGAT
GCACCACAAATTTATGGTGGTCGATGGGGAAACGGTGATCACCGGCTCAGCAAACTGGACATTAAGCGGCATCCACGGAG
ATTTCGCCAACCCGGAAACCAGGGGCAATGTAAACCACCTAATGCGGATCCAAGATGCGGCGATCGCCCAGGTTTTTACG
GCAGAATTTGAGGAGATGTGGACAGGGCGCAAATTTGGAGTTCAGAAACTTCAGGAACCGCCCCAAACCTTTAGCGTGGG
TAACAGTCGCGTCACCGTTCAGTTTTCGCCTTTCTCCAGTTCCCAGCCCTGGGAAAATACGAGCAATGGTCTCATTGGCA
GCACCCTCGCCCAAGCCCAAGAGTCGATTAGCCTGGCCCTATTCGTGTTCTCTGAGCAAAAAATCGCCAATATTTTAGAA
AAAGAAGCCCAAGCGGGCACTGAAATCCGCGCCTTAATTGATCCGAGTTTTGCCTTTCGGGAATATAGCGATGGGCTGGA
TCTGTTGGGGGTGAATCTCAAGGAAAAATGTGACCCCTTTAATCGGCCTTGGGCTAACCCCATTCAAACCGTCGGCACGC
CCAAATTACCCAAGGGGGACAAATTTCACCACAAATTCGCTGTCATCGATGGAAAAACCGTAATTACTGGCTCCCATAAT
TGGTCGGCTGCTGCCAATAATCAAAACGACGAAACTCTCTTAATTATCCAGAACGAGGCGATCGCCCAACAATTTCAAGC
TGAATTCGATCAGTTTTATACCACGGCCTACCTGGGGATCCCGCCCTTTATCGCCAGCAAACAAAAACCGATTCCCGCTG
ACTGTACTGTAGCCGCCACCGATGGCCCTGTAAACCTTAATACCGCCAGTGCCGTCGAACTTGAAACCCTACCTGGCATT
GGCCCCAGTCTCGCCCAAGGAATTATCGAAGGCCGTCCCTACTCTGGTTTGACGGATCTGCAGCGGGTGTCGGGCATTGG
GGAAAAGAAAGCGGCTGACCTGGCCGGAAAAGTCACTTGGTAG

Domains

Predicted by InterproScan.

PLD-like domain (PLDc_2)

(295-431)

PLD-like domain (PLDc_2)

(69-247)

Helix-hairpin-helix motif (HHH_3)

(463-519)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Synechocystis sp. PCC 6803

47.978

100

0.502

Multiple sequence alignment