Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilL-C   Type   Machinery gene
Locus tag   AWQ24_RS08295 Genome accession   NZ_CP016483
Coordinates   1725269..1728433 (-) Length   1054 a.a.
NCBI ID   WP_232318902.1    Uniprot ID   -
Organism   Picosynechococcus sp. PCC 8807     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1720269..1733433
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AWQ24_RS08275 (AWQ24_08275) - 1721171..1722343 (+) 1173 WP_083993512.1 S-layer homology domain-containing protein -
  AWQ24_RS08280 (AWQ24_08280) hisF 1722333..1723115 (-) 783 WP_065716521.1 imidazole glycerol phosphate synthase subunit HisF -
  AWQ24_RS08285 (AWQ24_08285) - 1723321..1723617 (+) 297 WP_030006981.1 hypothetical protein -
  AWQ24_RS08290 (AWQ24_08290) - 1723614..1725206 (-) 1593 WP_065716522.1 SpoIID/LytB domain-containing protein -
  AWQ24_RS08295 (AWQ24_08295) pilL-C 1725269..1728433 (-) 3165 WP_232318902.1 hybrid sensor histidine kinase/response regulator Machinery gene
  AWQ24_RS08300 (AWQ24_08300) - 1728605..1729357 (+) 753 WP_065716523.1 YebC/PmpR family DNA-binding transcriptional regulator -
  AWQ24_RS08305 (AWQ24_08305) - 1729513..1730751 (+) 1239 WP_030006977.1 GAF domain-containing sensor histidine kinase -
  AWQ24_RS08310 (AWQ24_08310) dapF 1730748..1731593 (-) 846 WP_065716524.1 diaminopimelate epimerase -
  AWQ24_RS08315 (AWQ24_08315) - 1731635..1731844 (+) 210 WP_062434363.1 Hfq-related RNA-binding protein -
  AWQ24_RS08320 (AWQ24_08320) - 1731909..1732823 (+) 915 WP_012307257.1 M23 family metallopeptidase -

Sequence

Protein


Download         Length: 1054 a.a.        Molecular weight: 116721.03 Da        Isoelectric Point: 4.4911

>NTDB_id=188542 AWQ24_RS08295 WP_232318902.1 1725269..1728433(-) (pilL-C) [Picosynechococcus sp. PCC 8807]
MGAPVSNNSHNEAHNYQDSEFEDELLELFEDLDAETSAPPATDFPKEIDPKVSFISFANNFEELLAFEEVTSPQSQTPQQ
ASSQNEADLEADLEALLQDTDPNQPSETETYATESEPYFPLEDPVSPPLKRPKAISSQISPVTNGQITYYPPLEDLGQYL
EVSSSSSANSVDWQALTQLIEQTPSAPSPNPSPKKRPQIAISKQTDFGELEALLQQADTMGGPPITTTSGPSTNRQRSQK
VNSFEQTMRIPVKQLDNLSNLMGELVVNRNTLEQSQEKLRQFLDNLTGQVQRLNDIGSQMQDLYERSLLERSLLASRGQS
SEYHFPPGFTTDKADAPGRHRSQEYDPLEMDQFTGFHLLSQEMIELIVRVRESSSDIEFLVDDNEQVARNLRQVSTQLQE
GLTKSRMIPFAQAADRLVRPVREISLKLNKRASLNVEGREVLIDKMILEQLYDPLTHLINNAITHGIESPEVRLSKGKPA
AGVVSLKAYIQGNQIVIAIADDGAGMDSEALVHKALEKNLITPDQLSDLSQQDIYDFIFHPGFTTKAQADDFSGRGVGMD
VVRTALGSIRGTITIDSALGKGTTFTIRLPLTLNICRALFCLNRHARIALPMDGVEDMQTYTLDQVEQEGRRRYIRWRDS
RLRVYPLSNLLTLQRQIGRGSIYGGVGDPDQIPVVILRSAGNLLAIQVDQVLGEQEIVIKQIEGPIPKPAAIAGATVLGD
GTVMPVVDVLELIELAAQGRVRAKATTWQDNPALHLLVPEMVQTEPIVLIVDDSITVRELLSMSFTKAGYRVEQARDGQE
AWEKLRGGLPCELVFCDIEMPRMDGLELLSRIQKDPNLEKIPVAMLTSRGADRHRQMAAELGASAYFTKPYLEEVLLDAA
QKMRQGDVLLPGSTKQPTVSEPGDGMGDFEPLDDASVKITAPRILIVDDSVTVRELLAITFQKAGYHVERARDGEEALEQ
LLENPDFSLVFCDIEMPRLDGLALLEEIQQYPELAHIPIAMLTSRGAGRHRKIAAARGAKAYFTKPYVEDHLLEAAARLM
AGEILLDENGKVVA

Nucleotide


Download         Length: 3165 bp        

>NTDB_id=188542 AWQ24_RS08295 WP_232318902.1 1725269..1728433(-) (pilL-C) [Picosynechococcus sp. PCC 8807]
ATGGGGGCACCAGTGAGCAACAACAGTCATAATGAAGCGCATAACTATCAAGATTCCGAGTTTGAAGACGAACTCCTAGA
ACTGTTTGAAGACCTCGACGCAGAAACCTCTGCCCCCCCAGCGACCGATTTTCCCAAGGAGATCGATCCGAAAGTTTCAT
TTATCAGCTTCGCGAATAACTTTGAAGAACTTTTAGCCTTCGAGGAAGTGACCTCCCCCCAGTCCCAAACGCCTCAGCAA
GCCTCGTCCCAAAACGAAGCCGACCTCGAAGCCGACTTAGAAGCTCTCCTCCAAGATACTGATCCCAACCAACCCTCTGA
AACAGAAACTTACGCCACCGAGAGCGAACCTTATTTTCCCCTCGAAGATCCCGTTTCCCCGCCCCTCAAACGCCCCAAGG
CCATTTCCTCCCAGATCTCCCCGGTTACCAACGGTCAGATCACCTACTACCCTCCCCTAGAGGATCTCGGTCAATACCTA
GAAGTGTCATCAAGCTCGTCGGCCAACTCTGTTGACTGGCAAGCCCTCACCCAACTCATTGAACAAACTCCGAGCGCTCC
TAGCCCTAATCCCTCCCCCAAAAAACGCCCCCAAATTGCCATTTCCAAACAGACGGACTTTGGTGAATTAGAAGCCCTGC
TCCAACAAGCAGACACCATGGGAGGGCCTCCTATTACCACCACCAGCGGCCCTAGTACAAATCGTCAACGCTCCCAAAAG
GTCAACAGCTTTGAGCAGACCATGCGGATTCCCGTCAAGCAACTCGATAACCTCAGTAACTTGATGGGAGAACTCGTTGT
CAACCGCAATACACTCGAACAAAGCCAAGAAAAACTCCGGCAATTCCTCGACAATCTCACGGGCCAAGTGCAGCGGCTCA
ATGACATTGGTAGCCAGATGCAAGATCTTTATGAACGTTCTCTCCTGGAGCGTTCCCTGCTGGCCAGTCGTGGTCAAAGT
AGTGAATATCACTTTCCCCCAGGTTTCACCACCGATAAGGCAGATGCCCCCGGTCGCCATCGTTCCCAAGAATATGACCC
CCTAGAAATGGATCAGTTCACCGGCTTTCACCTCCTCTCCCAGGAGATGATTGAACTGATTGTGCGGGTGCGAGAATCTT
CTTCGGATATCGAATTTCTAGTCGATGACAATGAACAAGTTGCCCGTAATCTCCGGCAGGTCAGTACGCAGCTCCAGGAA
GGCTTGACTAAATCACGGATGATTCCCTTTGCCCAAGCAGCCGATCGCCTGGTGCGCCCCGTCCGGGAAATTTCCCTCAA
ACTCAATAAGCGAGCCTCCCTCAATGTCGAAGGTCGAGAAGTGCTCATTGACAAAATGATCCTAGAGCAGCTCTATGATC
CCCTGACTCACCTGATCAACAACGCCATTACCCATGGGATTGAGTCCCCGGAAGTACGCCTCAGTAAGGGTAAGCCTGCG
GCGGGGGTTGTCTCCCTCAAAGCCTATATTCAGGGGAATCAAATTGTAATTGCCATTGCCGATGATGGTGCGGGGATGGA
TTCTGAAGCCCTCGTCCACAAAGCCCTCGAAAAAAACCTGATTACCCCTGATCAATTATCGGATCTCAGTCAACAGGATA
TTTATGATTTTATTTTCCATCCTGGCTTTACCACCAAGGCGCAGGCCGATGACTTTTCTGGTCGGGGAGTTGGCATGGAT
GTGGTTCGCACGGCCCTCGGTAGTATTCGAGGCACGATTACCATTGACTCCGCCCTGGGTAAAGGTACAACGTTTACCAT
CCGGCTACCCCTCACCCTCAATATCTGCCGCGCTTTATTTTGTCTCAATCGCCACGCCCGCATTGCTCTGCCTATGGATG
GGGTTGAAGATATGCAAACCTACACCCTCGACCAAGTGGAACAGGAAGGCCGCAGACGTTATATTCGCTGGCGAGATTCT
CGATTGCGGGTGTATCCCCTCAGTAATCTATTGACGCTCCAACGACAAATTGGGCGGGGCTCAATTTATGGAGGGGTTGG
GGATCCTGACCAAATTCCCGTTGTGATCCTGCGCAGTGCGGGCAATCTCCTGGCGATTCAAGTGGATCAGGTGCTAGGGG
AACAGGAAATCGTGATTAAACAGATCGAGGGGCCGATTCCGAAACCAGCGGCGATCGCCGGAGCGACAGTCCTGGGGGAT
GGCACAGTTATGCCCGTGGTTGATGTGTTAGAGCTGATCGAACTTGCGGCCCAGGGACGGGTCAGGGCCAAGGCTACCAC
CTGGCAAGATAACCCGGCCTTACACTTGCTCGTGCCAGAGATGGTACAAACAGAGCCCATTGTGTTGATTGTGGATGATT
CGATCACGGTGCGCGAACTCCTCTCGATGAGTTTCACAAAGGCTGGCTATCGGGTTGAGCAAGCCCGGGACGGCCAGGAA
GCTTGGGAAAAACTGCGGGGAGGCTTACCCTGTGAACTGGTCTTTTGCGATATTGAGATGCCGCGCATGGATGGCCTAGA
GCTATTATCTCGCATTCAAAAAGACCCGAATTTAGAAAAAATTCCGGTGGCCATGCTGACATCAAGGGGGGCCGATCGCC
ACCGACAAATGGCCGCTGAACTGGGGGCAAGTGCCTATTTCACGAAACCCTATTTAGAAGAAGTGCTGTTGGATGCGGCC
CAAAAAATGCGCCAAGGAGACGTGTTACTGCCGGGCAGTACGAAACAGCCCACGGTCTCGGAGCCTGGGGACGGGATGGG
TGATTTTGAACCCCTAGATGACGCGTCGGTAAAAATAACGGCCCCAAGGATTTTGATTGTGGATGATTCGGTGACAGTGC
GAGAATTGTTAGCCATTACCTTCCAAAAGGCGGGCTACCATGTGGAGCGGGCCCGGGATGGAGAAGAGGCTCTAGAGCAG
TTGTTGGAAAATCCCGATTTTAGTTTGGTGTTCTGTGATATTGAGATGCCGCGCCTAGATGGTTTAGCGTTGCTCGAAGA
AATTCAACAATATCCTGAATTGGCCCATATTCCCATTGCGATGTTGACCTCGCGCGGGGCCGGACGACACCGGAAAATTG
CGGCGGCACGGGGGGCAAAGGCCTATTTCACAAAGCCCTATGTGGAAGATCATTTGCTAGAAGCAGCGGCCCGGTTAATG
GCTGGGGAAATTTTACTAGACGAAAATGGTAAGGTGGTGGCGTAA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(453-592)

Response regulator receiver domain (Response_reg)

(924-1035)

Response regulator receiver domain (Response_reg)

(768-879)

Signal transducing histidine kinase, homodimeric domain (H-kinase_dim)

(246-302)

CheW-like domain (CheW)

(600-734)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilL-C Synechocystis sp. PCC 6803

52.245

99.336

0.519

Multiple sequence alignment