Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   AWQ24_RS06950 Genome accession   NZ_CP016483
Coordinates   1442917..1443312 (-) Length   131 a.a.
NCBI ID   WP_012306993.1    Uniprot ID   A0AAE8LM63
Organism   Picosynechococcus sp. PCC 8807     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1437917..1448312
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AWQ24_RS06935 (AWQ24_06935) - 1438570..1439364 (-) 795 WP_012306990.1 MlaE family lipid ABC transporter permease subunit -
  AWQ24_RS16535 (AWQ24_06940) - 1439470..1442178 (-) 2709 WP_065716367.1 methyl-accepting chemotaxis protein -
  AWQ24_RS06945 (AWQ24_06945) - 1442319..1442855 (-) 537 WP_030006571.1 chemotaxis protein CheW -
  AWQ24_RS06950 (AWQ24_06950) pilH 1442917..1443312 (-) 396 WP_012306993.1 response regulator transcription factor Machinery gene
  AWQ24_RS06955 (AWQ24_06955) - 1443571..1444758 (-) 1188 WP_065716368.1 response regulator -
  AWQ24_RS16615 hmpF 1445228..1445614 (+) 387 WP_250637204.1 pilus motility taxis protein HmpF -
  AWQ24_RS06960 (AWQ24_06960) hmpF 1445647..1446921 (+) 1275 WP_250637205.1 pilus motility taxis protein HmpF -
  AWQ24_RS06965 (AWQ24_06965) - 1446933..1447907 (-) 975 WP_065716369.1 NAD(P)/FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14598.04 Da        Isoelectric Point: 6.3538

>NTDB_id=188538 AWQ24_RS06950 WP_012306993.1 1442917..1443312(-) (pilH) [Picosynechococcus sp. PCC 8807]
MSRILVVEDSLSQREMISELLKGNGLTVDVAGDGLEALETLSQMAKNAAETLPNLIVLDIVMPRMNGYELCRRLKSDPKI
QNIPIVMCSSKGEEFDRYWGMKQGADAYIAKPFQPAELIGTIKQLLRSNKK

Nucleotide


Download         Length: 396 bp        

>NTDB_id=188538 AWQ24_RS06950 WP_012306993.1 1442917..1443312(-) (pilH) [Picosynechococcus sp. PCC 8807]
ATGAGTAGAATTTTGGTTGTTGAGGATAGCCTCTCTCAACGGGAAATGATTTCAGAATTACTGAAAGGCAACGGCTTGAC
AGTGGATGTTGCCGGTGATGGTCTTGAGGCGTTAGAAACCCTCAGTCAAATGGCTAAAAATGCGGCTGAAACCCTGCCCA
ACTTAATTGTGCTCGACATTGTTATGCCACGGATGAACGGTTACGAACTCTGTCGTCGCCTCAAATCCGACCCAAAAATT
CAAAATATCCCCATTGTGATGTGCTCTTCAAAGGGGGAAGAATTTGACCGGTACTGGGGCATGAAGCAGGGAGCCGATGC
TTATATCGCGAAACCCTTTCAGCCAGCGGAGTTAATTGGCACCATCAAGCAACTCCTACGCAGCAATAAAAAGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

67.969

97.71

0.664

Multiple sequence alignment