Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   AWQ24_RS05000 Genome accession   NZ_CP016483
Coordinates   1027477..1028898 (-) Length   473 a.a.
NCBI ID   WP_062433174.1    Uniprot ID   -
Organism   Picosynechococcus sp. PCC 8807     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1022477..1033898
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AWQ24_RS04980 (AWQ24_04980) - 1023650..1024123 (+) 474 WP_065716169.1 low molecular weight protein-tyrosine-phosphatase -
  AWQ24_RS04985 (AWQ24_04985) - 1024156..1025118 (+) 963 WP_083993492.1 CAP domain-containing protein -
  AWQ24_RS04990 (AWQ24_04990) btpA 1025238..1026071 (-) 834 WP_012306602.1 photosystem I biogenesis protein BtpA -
  AWQ24_RS04995 (AWQ24_04995) - 1026309..1027286 (+) 978 WP_065716170.1 cysteine synthase A -
  AWQ24_RS05000 (AWQ24_05000) radA 1027477..1028898 (-) 1422 WP_062433174.1 DNA repair protein RadA Machinery gene
  AWQ24_RS05005 (AWQ24_05005) rpaB 1029120..1029848 (+) 729 WP_012306606.1 response regulator transcription factor RpaB -
  AWQ24_RS05010 (AWQ24_05010) recJ 1030012..1032012 (+) 2001 WP_065716171.1 single-stranded-DNA-specific exonuclease RecJ -
  AWQ24_RS05015 (AWQ24_05015) psb30 1032083..1032214 (-) 132 WP_012306608.1 photosystem II reaction center protein Ycf12/Psb30 -
  AWQ24_RS05020 (AWQ24_05020) - 1032365..1032724 (+) 360 WP_065716172.1 YkgJ family cysteine cluster protein -
  AWQ24_RS16420 - 1032898..1033038 (-) 141 WP_168191139.1 hypothetical protein -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 51000.55 Da        Isoelectric Point: 6.8992

>NTDB_id=188536 AWQ24_RS05000 WP_062433174.1 1027477..1028898(-) (radA) [Picosynechococcus sp. PCC 8807]
MAKAKTVYVCRECGAEARQWLGKCPDCGVYGSLQEEIREKESSTGVSRTWHHKPKTTRKAASPVSRTAVKFTDIDTRQRM
RFGSGFGELDRVLGGGLVPGSLVLIGGDPGIGKSTLLLQVAYQLSTSLPRILYVSAEESGQQIKLRGDRLRDAAHPPEEN
LYVLTETGLETILAELETLQPQVAVIDSIQTLYYSALGSAPGSVSQVRECTSALMQVAKRENITLFIVGHVTKEGAIAGP
RVLEHLVDTVLYFEGDRYASHRLLRSVKNRFGATHEVGIFEMGEQGLEEVLNPSELFLGNREEATPGTATVVACEGTRPL
LVELQALVSPTSYSSPRRSTTGVDYSRLQQILAVLEKRVGIPLSKLDAYVASAGGLTVSEPAVDLGIAIALVASFRDRLV
SPQTVLIGEVGLGGQIRPVSHLETRLKEAMKLGFTRAIVPKGQKLPDGLDLDIIPVARVLDAIVAALPADGKE

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=188536 AWQ24_RS05000 WP_062433174.1 1027477..1028898(-) (radA) [Picosynechococcus sp. PCC 8807]
ATGGCTAAGGCAAAAACGGTTTATGTGTGTCGTGAATGTGGGGCAGAGGCGCGGCAATGGCTCGGTAAATGCCCAGATTG
TGGGGTCTATGGGTCGTTGCAAGAAGAGATCCGCGAAAAGGAAAGCAGTACTGGTGTGAGTCGTACCTGGCACCATAAGC
CGAAAACAACAAGAAAAGCCGCCAGTCCAGTCTCCCGCACTGCGGTGAAATTTACAGATATTGATACTCGCCAACGGATG
CGCTTTGGGTCTGGGTTTGGGGAGTTAGACCGGGTGCTTGGCGGAGGGTTAGTCCCAGGTTCCTTGGTGCTGATTGGGGG
CGATCCGGGCATTGGGAAATCGACATTATTACTCCAGGTGGCCTATCAACTCAGCACAAGTTTACCAAGAATTTTGTATG
TGTCGGCGGAGGAATCGGGCCAGCAAATCAAACTCCGGGGCGATCGCCTCCGGGATGCAGCCCACCCCCCAGAAGAAAAT
TTATATGTACTAACGGAAACGGGCCTGGAAACGATTTTGGCTGAATTGGAAACTCTCCAGCCCCAGGTGGCAGTGATTGA
TAGTATTCAGACCTTGTATTATTCCGCCTTGGGTTCCGCCCCCGGTTCAGTGTCCCAGGTGCGGGAATGTACCTCGGCTT
TGATGCAAGTGGCGAAGCGGGAAAACATTACGCTGTTTATCGTCGGTCATGTCACCAAGGAAGGGGCGATCGCCGGGCCA
CGGGTTTTGGAACACCTCGTTGATACGGTGCTTTATTTCGAGGGAGATAGATATGCCTCCCATCGGTTGTTGCGGTCGGT
GAAAAATCGCTTTGGGGCCACCCATGAAGTCGGCATTTTTGAGATGGGTGAACAGGGTTTAGAGGAAGTGCTCAATCCCT
CAGAATTATTTCTAGGTAACCGCGAAGAGGCCACCCCCGGCACTGCCACCGTTGTCGCCTGTGAAGGCACCCGGCCCCTT
TTAGTAGAATTGCAAGCCCTAGTCAGTCCCACCAGCTATTCTTCCCCTCGACGTTCCACCACAGGCGTTGATTATTCCCG
TCTCCAGCAAATTTTGGCGGTGCTAGAAAAGCGGGTCGGCATTCCCCTCTCAAAGCTAGATGCCTATGTTGCTTCGGCGG
GGGGCTTGACGGTTTCTGAGCCGGCGGTGGATTTGGGGATTGCCATTGCTTTGGTGGCCAGCTTCCGCGATCGCCTTGTT
TCACCCCAGACTGTGCTGATCGGAGAAGTGGGTTTGGGGGGACAAATTCGACCTGTTTCTCACTTGGAAACTCGCCTGAA
GGAAGCAATGAAATTAGGCTTTACCCGTGCCATTGTGCCCAAAGGCCAAAAGTTACCAGACGGTTTGGATCTCGATATTA
TTCCCGTGGCTCGCGTGCTGGATGCAATCGTCGCTGCCCTGCCTGCCGATGGCAAAGAATAG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(378-441)

AAA domain (AAA_25)

(92-235)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

52.442

99.577

0.522
  radA Streptococcus pneumoniae Rx1

48.298

99.366

0.48
  radA Streptococcus pneumoniae D39

48.298

99.366

0.48
  radA Streptococcus pneumoniae R6

48.298

99.366

0.48
  radA Streptococcus pneumoniae TIGR4

48.298

99.366

0.48
  radA Streptococcus mitis SK321

50

93.446

0.467
  radA Streptococcus mitis NCTC 12261

49.774

93.446

0.465

Multiple sequence alignment