Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   AWQ22_RS07065 Genome accession   NZ_CP016477
Coordinates   1463477..1463872 (-) Length   131 a.a.
NCBI ID   WP_012306993.1    Uniprot ID   A0AAE8LM63
Organism   Picosynechococcus sp. PCC 7117     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1458477..1468872
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AWQ22_RS07050 (AWQ22_07050) - 1459141..1459935 (-) 795 WP_012306990.1 MlaE family lipid ABC transporter permease subunit -
  AWQ22_RS17090 (AWQ22_07055) - 1460031..1462739 (-) 2709 WP_065710610.1 methyl-accepting chemotaxis protein -
  AWQ22_RS07060 (AWQ22_07060) - 1462880..1463416 (-) 537 WP_065710611.1 chemotaxis protein CheW -
  AWQ22_RS07065 (AWQ22_07065) pilH 1463477..1463872 (-) 396 WP_012306993.1 response regulator transcription factor Machinery gene
  AWQ22_RS07070 (AWQ22_07070) - 1464131..1465318 (-) 1188 WP_065710612.1 response regulator -
  AWQ22_RS07075 (AWQ22_07075) hmpF 1465748..1467475 (+) 1728 WP_065710613.1 pilus motility taxis protein HmpF -
  AWQ22_RS07080 (AWQ22_07080) - 1467488..1468462 (-) 975 WP_065710614.1 NAD(P)/FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14598.04 Da        Isoelectric Point: 6.3538

>NTDB_id=188521 AWQ22_RS07065 WP_012306993.1 1463477..1463872(-) (pilH) [Picosynechococcus sp. PCC 7117]
MSRILVVEDSLSQREMISELLKGNGLTVDVAGDGLEALETLSQMAKNAAETLPNLIVLDIVMPRMNGYELCRRLKSDPKI
QNIPIVMCSSKGEEFDRYWGMKQGADAYIAKPFQPAELIGTIKQLLRSNKK

Nucleotide


Download         Length: 396 bp        

>NTDB_id=188521 AWQ22_RS07065 WP_012306993.1 1463477..1463872(-) (pilH) [Picosynechococcus sp. PCC 7117]
ATGAGTAGAATTTTGGTTGTTGAGGATAGCCTCTCTCAACGGGAAATGATTTCAGAATTACTGAAAGGCAACGGCTTGAC
AGTGGATGTTGCTGGTGATGGTCTTGAGGCGTTAGAAACCCTCAGTCAAATGGCTAAAAATGCGGCTGAAACCCTGCCCA
ACTTAATTGTGCTCGACATTGTTATGCCACGGATGAACGGCTACGAACTCTGTCGTCGTCTCAAATCCGACCCGAAAATT
CAAAATATCCCCATTGTGATGTGCTCTTCAAAGGGGGAAGAATTTGACCGATATTGGGGCATGAAGCAGGGAGCCGACGC
TTATATCGCGAAACCCTTTCAGCCAGCGGAGTTAATTGGCACCATCAAGCAACTCCTACGCAGCAATAAAAAGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

67.969

97.71

0.664

Multiple sequence alignment