Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   AWQ22_RS05005 Genome accession   NZ_CP016477
Coordinates   1029838..1031259 (-) Length   473 a.a.
NCBI ID   WP_065710389.1    Uniprot ID   A0AAN0YGJ6
Organism   Picosynechococcus sp. PCC 7117     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1024838..1036259
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AWQ22_RS04980 (AWQ22_04980) - 1025101..1025574 (+) 474 WP_065710386.1 low molecular weight protein-tyrosine-phosphatase -
  AWQ22_RS04985 (AWQ22_04985) - 1025607..1026569 (+) 963 WP_084448957.1 CAP domain-containing protein -
  AWQ22_RS04990 (AWQ22_04990) btpA 1026688..1027521 (-) 834 WP_012306602.1 photosystem I biogenesis protein BtpA -
  AWQ22_RS04995 (AWQ22_04995) - 1027759..1028736 (+) 978 WP_065710387.1 cysteine synthase A -
  AWQ22_RS05000 (AWQ22_05000) - 1028863..1029417 (+) 555 WP_065710388.1 tetratricopeptide repeat protein -
  AWQ22_RS05005 (AWQ22_05005) radA 1029838..1031259 (-) 1422 WP_065710389.1 DNA repair protein RadA Machinery gene
  AWQ22_RS05010 (AWQ22_05010) rpaB 1031481..1032209 (+) 729 WP_012306606.1 response regulator transcription factor RpaB -
  AWQ22_RS05015 (AWQ22_05015) recJ 1032373..1034373 (+) 2001 WP_065710390.1 single-stranded-DNA-specific exonuclease RecJ -
  AWQ22_RS05020 (AWQ22_05020) psb30 1034444..1034575 (-) 132 WP_012306608.1 photosystem II reaction center protein Ycf12/Psb30 -
  AWQ22_RS05025 (AWQ22_05025) - 1034726..1035085 (+) 360 WP_065710391.1 YkgJ family cysteine cluster protein -
  AWQ22_RS16925 - 1035259..1035399 (-) 141 WP_168191139.1 hypothetical protein -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 51029.59 Da        Isoelectric Point: 7.1304

>NTDB_id=188519 AWQ22_RS05005 WP_065710389.1 1029838..1031259(-) (radA) [Picosynechococcus sp. PCC 7117]
MAKAKTVYVCRECGAEARQWLGKCPDCGVYGSLQEEIREKESSTGVSRTWHHKPKTTRKTASPVSRTAVKFTDIDTRQRM
RFGSGFGELDRVLGGGLVPGSLVLIGGDPGIGKSTLLLQVAYQLSTSLPRILYVSAEESGQQIKLRGDRLRDAAHPPEEN
LYVLTETGLETILAELETLQPQVAVIDSIQTLYYSALGSAPGSVSQVRECTSALMQVAKRENITLFIVGHVTKEGAIAGP
RVLEHLVDTVLYFEGDRYASHRLLRSVKNRFGATHEVGIFEMGEQGLEEVLNPSELFLGNREEATPGTATVVACEGTRPL
LVELQALVSPTSYSSPRRSTTGVDYSRLQQILAVLEKRVGIPLSKLDAYVASAGGLTVSEPAVDLGIAIALVASFRDRLV
SPQTVLIGEVGLGGQIRPVSHLETRLKEAMKLGFTRAIVPKGQKLPDGLNLDIIPVARVLDAIVAALPADGKE

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=188519 AWQ22_RS05005 WP_065710389.1 1029838..1031259(-) (radA) [Picosynechococcus sp. PCC 7117]
ATGGCTAAGGCAAAAACGGTTTATGTGTGTCGTGAATGTGGGGCAGAGGCGCGGCAATGGCTCGGTAAATGCCCAGATTG
TGGGGTCTATGGGTCGCTGCAAGAAGAGATCCGCGAAAAGGAAAGCAGTACTGGTGTGAGTCGTACCTGGCACCATAAGC
CGAAAACAACCAGAAAAACAGCCAGTCCAGTCTCTCGCACTGCGGTGAAATTTACAGATATTGATACTCGCCAACGGATG
CGCTTTGGGTCTGGGTTTGGGGAATTAGACCGGGTGCTTGGGGGTGGCTTAGTGCCTGGCTCTTTGGTGTTGATTGGGGG
CGATCCGGGCATTGGGAAATCGACATTATTACTCCAGGTGGCCTATCAACTCAGCACAAGTTTACCAAGAATTTTGTATG
TGTCGGCGGAGGAATCGGGCCAGCAAATCAAACTCCGGGGCGATCGCCTCCGGGATGCAGCCCACCCCCCAGAAGAAAAT
TTATATGTACTAACGGAAACGGGCCTCGAAACGATTTTGGCTGAGTTGGAAACTCTCCAGCCCCAGGTGGCAGTGATCGA
TAGTATTCAGACCTTGTATTATTCCGCCTTGGGTTCCGCCCCCGGTTCAGTGTCCCAGGTGCGGGAATGTACCTCGGCTT
TGATGCAAGTGGCGAAGCGGGAAAACATTACGCTGTTTATCGTCGGTCATGTCACCAAGGAAGGGGCGATCGCCGGGCCA
CGGGTTTTGGAACACCTCGTTGATACGGTGCTGTATTTCGAGGGAGATAGATATGCCTCCCATCGGCTGTTGCGTTCCGT
GAAAAATCGCTTTGGGGCGACCCATGAGGTGGGAATTTTCGAGATGGGAGAACAGGGTTTAGAGGAAGTGCTCAATCCTT
CAGAACTTTTCCTCGGTAACCGCGAAGAGGCCACCCCCGGTACCGCCACCGTTGTTGCCTGTGAAGGCACCCGGCCCCTT
TTAGTAGAATTGCAAGCCCTAGTCAGTCCCACCAGTTATTCTTCCCCTCGGCGTTCCACCACAGGCGTTGATTATTCTCG
TCTCCAGCAAATTTTGGCGGTGTTAGAAAAGCGAGTGGGCATTCCCCTTTCTAAGTTAGACGCCTATGTGGCTTCGGCGG
GCGGTCTGACAGTTTCGGAACCCGCCGTTGATCTGGGGATTGCCATTGCTTTGGTCGCTAGTTTCCGCGATCGCCTTGTT
TCACCCCAGACTGTGCTGATCGGGGAAGTGGGTTTGGGGGGACAAATTCGGCCTGTTTCTCACCTCGAAACTCGCCTCAA
GGAAGCAATGAAATTAGGCTTTACCCGTGCCATTGTGCCCAAAGGCCAAAAGTTACCAGACGGTTTGAACCTCGATATTA
TTCCCGTGGCTCGCGTGCTGGATGCAATCGTCGCTGCCCTGCCTGCCGATGGCAAAGAATAG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(378-441)

AAA domain (AAA_25)

(92-235)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

52.442

99.577

0.522
  radA Streptococcus pneumoniae Rx1

48.298

99.366

0.48
  radA Streptococcus pneumoniae D39

48.298

99.366

0.48
  radA Streptococcus pneumoniae R6

48.298

99.366

0.48
  radA Streptococcus pneumoniae TIGR4

48.298

99.366

0.48
  radA Streptococcus mitis SK321

50

93.446

0.467
  radA Streptococcus mitis NCTC 12261

49.774

93.446

0.465

Multiple sequence alignment