Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilL-C   Type   Machinery gene
Locus tag   AWQ21_RS07965 Genome accession   NZ_CP016474
Coordinates   1678688..1681843 (-) Length   1051 a.a.
NCBI ID   WP_065715269.1    Uniprot ID   A0A1B1TTA3
Organism   Picosynechococcus sp. PCC 7003     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1673688..1686843
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AWQ21_RS07945 (AWQ21_07945) - 1674568..1675728 (+) 1161 WP_198159626.1 S-layer homology domain-containing protein -
  AWQ21_RS07950 (AWQ21_07950) hisF 1675725..1676510 (-) 786 WP_065714074.1 imidazole glycerol phosphate synthase subunit HisF -
  AWQ21_RS07955 (AWQ21_07955) - 1676730..1677026 (+) 297 WP_065714075.1 hypothetical protein -
  AWQ21_RS07960 (AWQ21_07960) - 1677033..1678625 (-) 1593 WP_065714076.1 SpoIID/LytB domain-containing protein -
  AWQ21_RS07965 (AWQ21_07965) pilL-C 1678688..1681843 (-) 3156 WP_065715269.1 hybrid sensor histidine kinase/response regulator Machinery gene
  AWQ21_RS07970 (AWQ21_07970) - 1682026..1682778 (+) 753 WP_065714077.1 YebC/PmpR family DNA-binding transcriptional regulator -
  AWQ21_RS07975 (AWQ21_07975) - 1682886..1684160 (+) 1275 WP_065714078.1 GAF domain-containing sensor histidine kinase -
  AWQ21_RS07980 (AWQ21_07980) dapF 1684157..1685002 (-) 846 WP_065714079.1 diaminopimelate epimerase -
  AWQ21_RS07985 (AWQ21_07985) - 1685043..1685252 (+) 210 WP_065714080.1 Hfq-related RNA-binding protein -
  AWQ21_RS07990 (AWQ21_07990) - 1685317..1686231 (+) 915 WP_065714081.1 M23 family metallopeptidase -
  AWQ21_RS07995 (AWQ21_07995) - 1686536..1686778 (+) 243 WP_065714082.1 FeoA family protein -

Sequence

Protein


Download         Length: 1051 a.a.        Molecular weight: 116740.35 Da        Isoelectric Point: 4.5070

>NTDB_id=188507 AWQ21_RS07965 WP_065715269.1 1678688..1681843(-) (pilL-C) [Picosynechococcus sp. PCC 7003]
MNNNSHDEAHNYQDSEFEDELLELFEDLEADPPPPPTVDFPKEIDPKVSFISFANNFEELLAFEEATSSQSQMSQQASPQ
NEADLEADLEALLQDTNPNQPPEIETYAVESEPYFPLEDPVSPPLKRPKAIATKISPVTNGQISYYSPLEDLSQYLEVTP
SSSANPVNWNALTQLIQQAPSASSSSPSPSPQKRPQITISKQTDFGELEALLQQADTMGGPPITTTSGPNTTRQRSQKVN
SFEQTMRIPVKQLDNLSNLMGELVVNRNTLEQSQEKLRQFLDNLTGQVQRLNDIGGQMQDLYERSLLERSLLASRGQNTE
YHFPSGFTDKPAAPNRSNAQEYDPLEMDQFTGFHLLSQEMIELIVRVRESSSDIEFLVDDNEQIARNLRQVSTQLQEGLT
KSRMIPFAQAADRLVRPVREISLKLNKRASLNVEGREVLIDKMILEQLYDPLTHLINNAITHGIEAPEVRLSKGKPAAGV
VSLKAYIQGNQIVISIADDGAGMDSEALVHKALEKNLITPEQLPDLSQQDIYDFIFHPGFTTKAQADDFSGRGVGMDVVR
TALGSIRGTITIDSVLGKGTTFTIRLPLTLNICRALFCLNRHARIALPMDGVEDMQTYTLDQVEQQGRRRYIRWRDSRLR
VYPLNNLLTLQRQIGRGSIYGGVSDPDQIPVVILRSAGNLLAIQVDQVLGEQEIVIKQIEGPIPKPAAIAGATVLGDGTV
MPVVDVLELIELAAQGRVRAKATTWQDNPALHLLVPEMVQTEPIVLIVDDSITVRELLSMSFTKAGYRVEQARDGQEAWE
KLRGGLPCELVFCDIEMPRMDGLELLSRIQKDPNLEKIPVAMLTSRGADRHRQMAAELGASAYFTKPYLEEVLLDAAQKM
RQGDVLLPGSTRQPTVLEPEDEMGDFEPLDDASVKVTAPRILIVDDSVTVRELLAITFQKAGYHVERARDGEDALEQLLK
NPDFSLVFCDIEMPRLDGLALLEEIQKYPELTHIPIAMLTSRGAGRHRQIAAARGAKAYFTKPYVEDQLLGAAARLMAGE
ILLDENGKVVA

Nucleotide


Download         Length: 3156 bp        

>NTDB_id=188507 AWQ21_RS07965 WP_065715269.1 1678688..1681843(-) (pilL-C) [Picosynechococcus sp. PCC 7003]
GTGAACAACAACAGTCATGATGAAGCGCATAACTATCAAGACTCTGAGTTTGAGGACGAACTCCTAGAACTATTTGAAGA
CCTCGAAGCAGACCCTCCGCCTCCACCAACGGTCGACTTTCCCAAGGAAATCGATCCGAAAGTTTCATTTATCAGCTTTG
CGAACAACTTTGAAGAACTTTTAGCCTTTGAGGAAGCGACATCTTCCCAGTCGCAAATGTCTCAACAAGCTTCGCCCCAA
AACGAAGCCGACCTCGAAGCCGATTTAGAAGCTCTCCTCCAAGATACTAACCCCAACCAACCCCCCGAAATAGAAACTTA
CGCTGTCGAGAGCGAACCTTATTTCCCCCTCGAAGACCCCGTTTCCCCGCCCCTCAAGCGCCCCAAGGCCATTGCCACCA
AGATCTCCCCGGTAACCAATGGTCAGATCAGCTATTACTCTCCCCTAGAAGATCTCAGTCAGTACCTAGAAGTGACGCCC
AGTTCGTCGGCCAACCCTGTAAACTGGAACGCCCTCACCCAACTCATTCAACAAGCCCCTAGCGCCTCTAGCTCTAGCCC
TAGTCCCTCCCCTCAAAAACGTCCCCAAATCACCATTTCCAAACAGACAGACTTCGGCGAATTAGAAGCCCTGCTCCAAC
AGGCAGACACCATGGGCGGGCCTCCTATTACCACCACCAGTGGCCCCAACACAACTCGTCAACGCTCCCAAAAGGTCAAC
AGCTTTGAGCAGACCATGCGGATTCCCGTCAAGCAACTCGATAACCTGAGCAACTTGATGGGAGAACTTGTTGTCAACCG
CAATACCCTCGAACAAAGCCAAGAAAAGCTCCGGCAATTCCTCGACAATCTCACGGGCCAAGTTCAACGGCTCAATGACA
TTGGTGGCCAGATGCAAGATCTTTACGAGCGCTCCCTCCTAGAGCGTTCTCTGCTTGCCAGTCGCGGCCAGAATACTGAA
TATCACTTTCCTTCAGGCTTTACTGACAAACCTGCCGCCCCCAACCGCAGCAATGCCCAAGAATACGATCCCCTCGAAAT
GGATCAGTTCACTGGCTTCCATCTCCTCTCCCAGGAGATGATTGAGCTGATCGTGCGGGTGCGTGAATCTTCCTCTGACA
TCGAATTTTTAGTTGATGATAATGAACAAATTGCCCGTAACCTCCGGCAGGTCAGTACGCAGCTCCAGGAAGGTTTGACC
AAATCACGGATGATTCCCTTTGCCCAAGCGGCCGATCGCCTGGTGCGCCCCGTCCGGGAAATTTCGCTCAAACTTAATAA
GCGAGCCTCCCTCAATGTTGAAGGTCGAGAAGTGCTCATTGACAAAATGATCCTGGAGCAACTCTACGACCCCCTAACTC
ACCTGATCAACAACGCCATTACCCATGGGATCGAAGCCCCGGAAGTACGCCTCAGTAAGGGTAAGCCTGCGGCAGGGGTT
GTCTCCCTCAAGGCTTACATTCAGGGGAATCAAATTGTCATTTCTATTGCTGATGATGGCGCAGGGATGGATTCTGAAGC
CCTTGTCCACAAAGCCCTCGAAAAGAACCTGATCACCCCTGAGCAACTGCCGGATCTCAGTCAGCAGGATATTTATGACT
TTATTTTCCATCCTGGCTTTACCACCAAGGCCCAGGCCGATGACTTTTCGGGTCGCGGGGTTGGCATGGATGTGGTCCGC
ACTGCCCTGGGTAGTATTCGAGGCACGATTACCATTGACTCCGTTCTGGGTAAAGGCACAACATTTACCATTCGACTGCC
CCTCACCCTCAATATCTGTCGTGCTTTATTTTGTCTCAACCGCCATGCCCGCATTGCCCTGCCCATGGATGGGGTTGAAG
ATATGCAGACTTACACCCTAGACCAAGTGGAACAGCAAGGTCGCAGACGTTATATTCGCTGGCGAGATTCTCGATTGCGG
GTTTATCCTCTCAATAATTTGTTGACGCTCCAACGGCAAATTGGGCGGGGCTCAATCTATGGTGGAGTTAGCGATCCTGA
CCAAATTCCCGTTGTGATCCTGCGCAGTGCGGGGAATCTCCTGGCGATTCAAGTGGATCAGGTGCTGGGGGAACAGGAAA
TTGTGATTAAACAGATCGAAGGGCCGATCCCAAAACCAGCGGCGATCGCCGGGGCGACAGTCCTGGGGGATGGCACGGTT
ATGCCTGTGGTCGATGTGCTAGAGCTGATTGAACTTGCGGCCCAGGGACGGGTCAGGGCCAAGGCTACCACCTGGCAAGA
TAACCCGGCCTTACATCTACTCGTGCCAGAGATGGTGCAAACAGAGCCCATTGTGTTGATTGTAGATGATTCGATCACGG
TGCGCGAACTCCTCTCGATGAGTTTCACCAAGGCTGGCTATCGGGTTGAGCAGGCCCGGGATGGCCAGGAAGCTTGGGAA
AAACTCCGGGGAGGATTACCCTGTGAACTGGTCTTTTGCGACATTGAGATGCCGCGCATGGATGGCTTGGAGCTATTATC
GCGGATTCAAAAAGACCCCAATTTAGAAAAAATTCCGGTGGCAATGCTCACATCCAGGGGAGCGGATCGCCACCGACAAA
TGGCCGCTGAACTGGGAGCGAGTGCCTATTTCACGAAACCCTATCTTGAGGAAGTGCTTTTAGATGCGGCCCAAAAAATG
CGCCAAGGGGATGTATTGCTGCCCGGCAGTACGCGACAGCCCACGGTCTTGGAACCTGAAGACGAGATGGGGGATTTTGA
ACCCCTAGATGATGCGTCGGTGAAAGTGACGGCCCCAAGGATTTTGATTGTGGATGATTCGGTGACGGTGCGGGAATTGC
TGGCCATTACCTTCCAAAAGGCGGGCTACCATGTGGAACGGGCCCGGGATGGAGAGGATGCATTGGAGCAGTTATTGAAA
AATCCAGATTTTAGTTTGGTGTTCTGCGATATTGAGATGCCGCGTTTGGATGGTTTAGCGTTGCTCGAAGAAATTCAAAA
GTATCCTGAGTTGACTCACATTCCCATCGCCATGTTGACCTCACGCGGGGCCGGACGACACCGACAAATCGCAGCGGCCC
GGGGAGCAAAGGCCTATTTCACCAAACCCTATGTGGAAGATCAGTTGCTGGGGGCAGCGGCCCGGTTAATGGCTGGGGAA
ATTTTGCTAGATGAAAATGGTAAGGTGGTGGCGTAA

Domains

Predicted by InterproScan.

CheW-like domain (CheW)

(597-731)

Signal transducing histidine kinase, homodimeric domain (H-kinase_dim)

(244-300)

Response regulator receiver domain (Response_reg)

(765-876)

Response regulator receiver domain (Response_reg)

(921-1032)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(450-589)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1B1TTA3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilL-C Synechocystis sp. PCC 6803

55.158

90.39

0.499

Multiple sequence alignment