Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   AWQ21_RS06970 Genome accession   NZ_CP016474
Coordinates   1464811..1465206 (-) Length   131 a.a.
NCBI ID   WP_065713909.1    Uniprot ID   A0A1B1TP78
Organism   Picosynechococcus sp. PCC 7003     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1459811..1470206
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AWQ21_RS06955 (AWQ21_06955) - 1460454..1461248 (-) 795 WP_065713906.1 MlaE family lipid ABC transporter permease subunit -
  AWQ21_RS06960 (AWQ21_06960) - 1461359..1464073 (-) 2715 WP_065713907.1 methyl-accepting chemotaxis protein -
  AWQ21_RS06965 (AWQ21_06965) - 1464214..1464750 (-) 537 WP_065713908.1 chemotaxis protein CheW -
  AWQ21_RS06970 (AWQ21_06970) pilH 1464811..1465206 (-) 396 WP_065713909.1 response regulator transcription factor Machinery gene
  AWQ21_RS06975 (AWQ21_06975) - 1465426..1466652 (-) 1227 WP_065713910.1 response regulator -
  AWQ21_RS06980 (AWQ21_06980) hmpF 1467073..1468791 (+) 1719 WP_065713911.1 pilus motility taxis protein HmpF -
  AWQ21_RS06985 (AWQ21_06985) - 1468804..1469778 (-) 975 WP_065713912.1 NAD(P)/FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14641.16 Da        Isoelectric Point: 8.4769

>NTDB_id=188505 AWQ21_RS06970 WP_065713909.1 1464811..1465206(-) (pilH) [Picosynechococcus sp. PCC 7003]
MSRILVVEDSLSQREMISELLKGNGLTVDVAGDGLEALETLSQMTKNAAKTLPNLIVLDIVMPRMNGYELCRRLKSDPQI
QKIPIVMCSSKGEEFDRYWGMKQGADAYIAKPFQPAELIGTIKQLLRSNKK

Nucleotide


Download         Length: 396 bp        

>NTDB_id=188505 AWQ21_RS06970 WP_065713909.1 1464811..1465206(-) (pilH) [Picosynechococcus sp. PCC 7003]
ATGAGTAGAATTTTGGTTGTTGAGGATAGTCTCTCTCAACGGGAAATGATTTCAGAATTACTGAAAGGCAACGGCCTCAC
GGTGGATGTTGCCGGTGATGGCCTTGAGGCCTTAGAAACCCTCAGTCAAATGACTAAAAATGCAGCTAAAACCCTGCCCA
ACTTAATTGTGCTCGACATTGTTATGCCACGGATGAATGGTTATGAGCTCTGTCGTCGCCTCAAATCCGACCCCCAAATT
CAAAAAATCCCCATTGTGATGTGCTCTTCAAAAGGGGAAGAGTTTGACCGGTATTGGGGCATGAAGCAGGGAGCTGATGC
TTATATCGCTAAACCCTTTCAGCCGGCGGAGTTAATTGGCACAATCAAGCAACTCCTGCGCAGCAATAAAAAATAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1B1TP78

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

66.406

97.71

0.649

Multiple sequence alignment