Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   A4W75_RS01115 Genome accession   NZ_CP016467
Coordinates   220843..222651 (-) Length   602 a.a.
NCBI ID   WP_148484588.1    Uniprot ID   -
Organism   Latilactobacillus curvatus strain TMW 1.27     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 215843..227651
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A4W75_RS01090 (A4W75_01040) - 216012..217553 (+) 1542 WP_253732654.1 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase -
  A4W75_RS01095 (A4W75_01045) - 217659..218240 (+) 582 WP_253732656.1 hypothetical protein -
  A4W75_RS01100 (A4W75_01050) - 218427..219314 (+) 888 WP_065825208.1 metal ABC transporter solute-binding protein, Zn/Mn family -
  A4W75_RS01105 (A4W75_01055) - 219311..219991 (+) 681 WP_065825209.1 metal ABC transporter ATP-binding protein -
  A4W75_RS01110 (A4W75_01060) - 220026..220802 (+) 777 WP_065825914.1 metal ABC transporter permease -
  A4W75_RS01115 (A4W75_01065) pepF 220843..222651 (-) 1809 WP_148484588.1 oligoendopeptidase F Regulator
  A4W75_RS01120 (A4W75_01070) - 222848..224055 (+) 1208 Protein_224 LCP family protein -
  A4W75_RS01125 (A4W75_01075) - 224233..225471 (+) 1239 WP_080752751.1 NupC/NupG family nucleoside CNT transporter -

Sequence

Protein


Download         Length: 602 a.a.        Molecular weight: 67296.32 Da        Isoelectric Point: 4.6224

>NTDB_id=188435 A4W75_RS01115 WP_148484588.1 220843..222651(-) (pepF) [Latilactobacillus curvatus strain TMW 1.27]
MSTQQLPIRDAVPEKLTWDLTTIFKNDAAFEVAFKKVKTQLPTLKTLDRPFESADQLVATIEQILATFRQLETIYVYASM
KNDQDTANATYQGYQAQVDSLAAEVSAAAAFLEPAILAIPAGQLADWLTKTPNLAVYSHFIQTITDSRDHVLSGQEEALL
AAAGDIFSAASQTFSVLDNSDLQFPEVTDENGQTLQLSDGVYSQLLQSTNRSVRQAAFEALYKTYGQFKNTFATTLATEI
KGHNYLAQVHHYDSARQAALAPKAIPEAVYTTLVDQVNQHLPLLHRYTELRKKQLNLSELHMFDLYTPLLGKPALTYTYE
QAQATAKEALSILGPDYAKQVAHIFDDRLIDVCENQGKRSGAYSGGAYDTNPFILLNWQDDLNNLYTLVHETGHSVHSAF
TRQTQDYVYGDYPIFVAEIASTTNENLLTEYLLQTQSDPKVQAYLLNYYLDGFKGTVFRQTQFAEFEHAMHAAAANGQPL
TAEFMSQQYADINSRYYGPAVVNDPQIALEWTRIPHFYMNYYVYQYATGFAAATTLANGISTKQPGALNHYLDYLKAGSS
AYPIEIMQQAGVDMTSADYLERAFAVFEERLDQLEALLANLN

Nucleotide


Download         Length: 1809 bp        

>NTDB_id=188435 A4W75_RS01115 WP_148484588.1 220843..222651(-) (pepF) [Latilactobacillus curvatus strain TMW 1.27]
ATGTCAACTCAACAACTCCCCATCCGCGATGCTGTTCCAGAAAAGCTCACATGGGACTTAACCACGATTTTCAAAAATGA
TGCAGCTTTTGAAGTAGCCTTTAAGAAAGTTAAAACGCAATTACCCACACTCAAAACACTTGATCGTCCGTTTGAATCGG
CTGATCAATTAGTCGCTACAATCGAACAAATCTTAGCCACTTTCCGCCAGCTCGAAACAATTTACGTTTATGCTAGCATG
AAAAATGATCAGGATACTGCTAACGCAACTTATCAAGGCTATCAAGCCCAAGTGGACAGCTTAGCGGCCGAAGTTTCAGC
AGCAGCGGCCTTTTTAGAGCCTGCGATTCTTGCTATTCCGGCTGGGCAATTAGCAGATTGGCTTACCAAGACGCCTAATT
TAGCAGTTTACAGCCATTTCATTCAAACCATTACCGATAGTCGAGACCATGTCTTATCTGGGCAAGAAGAAGCCTTGTTA
GCTGCTGCCGGAGATATCTTCAGTGCTGCTAGTCAAACCTTCAGCGTCTTAGACAACTCGGATTTACAATTCCCAGAAGT
GACTGACGAAAACGGACAAACGTTGCAGCTTTCAGATGGGGTCTACAGCCAACTTTTACAATCAACCAACCGATCAGTCC
GCCAAGCAGCCTTCGAAGCACTTTACAAAACTTATGGTCAATTCAAAAATACATTTGCGACGACGCTTGCCACTGAAATC
AAAGGTCATAATTACTTAGCTCAAGTCCATCACTACGATAGTGCACGCCAAGCAGCGCTAGCACCCAAAGCAATTCCAGA
AGCCGTCTATACAACCTTGGTTGATCAAGTGAACCAACACTTACCACTTTTACATCGCTATACTGAATTACGCAAAAAGC
AACTTAATTTATCTGAATTACACATGTTTGATCTCTACACACCACTTTTAGGAAAACCCGCATTAACCTACACTTATGAG
CAGGCGCAAGCAACTGCCAAAGAAGCATTGTCGATCCTAGGACCCGATTACGCCAAACAAGTTGCCCATATTTTTGATGA
CCGCTTAATCGATGTTTGTGAAAACCAAGGGAAACGGAGTGGCGCCTATTCTGGCGGCGCTTATGACACCAATCCCTTCA
TTTTATTAAACTGGCAAGATGATTTAAACAACTTATACACATTGGTCCATGAAACGGGGCATAGTGTCCACAGCGCCTTC
ACCCGTCAGACCCAAGATTATGTTTATGGCGACTATCCAATTTTCGTGGCCGAAATTGCGTCAACAACCAATGAAAATCT
CTTAACGGAATATTTATTGCAAACACAGTCTGATCCTAAGGTCCAGGCCTATCTATTGAACTACTATTTGGATGGTTTTA
AAGGCACTGTTTTCCGTCAAACGCAATTCGCTGAGTTCGAACATGCGATGCATGCTGCCGCTGCCAATGGTCAGCCACTA
ACTGCCGAGTTCATGTCACAACAATATGCGGACATTAATAGCCGCTACTACGGACCTGCCGTCGTTAACGATCCACAGAT
TGCCCTTGAATGGACTCGGATTCCACATTTCTACATGAACTATTATGTTTACCAATACGCAACCGGCTTTGCTGCTGCAA
CGACTCTCGCTAACGGTATTAGCACCAAACAGCCCGGTGCTCTCAATCACTATTTAGACTACCTAAAAGCTGGGAGCTCC
GCCTACCCAATTGAAATTATGCAACAAGCCGGCGTCGATATGACGAGTGCCGACTATCTCGAACGCGCTTTTGCAGTTTT
CGAAGAACGCCTGGATCAACTCGAAGCCCTACTTGCTAACCTAAATTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(116-184)

Peptidase family M3 (Peptidase_M3)

(205-585)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

55.161

98.173

0.542

Multiple sequence alignment