Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   BSY239_RS18450 Genome accession   NZ_CP016449
Coordinates   3964701..3966341 (-) Length   546 a.a.
NCBI ID   WP_069048076.1    Uniprot ID   A0A1B3LXA9
Organism   Hydrogenophaga sp. RAC07     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3959701..3971341
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSY239_RS18425 (BSY239_3734) - 3959774..3961393 (+) 1620 WP_069048072.1 FMN-binding glutamate synthase family protein -
  BSY239_RS18430 (BSY239_3735) - 3961397..3961684 (-) 288 WP_069048073.1 hypothetical protein -
  BSY239_RS18435 (BSY239_3736) - 3961709..3962833 (-) 1125 WP_156775530.1 hypothetical protein -
  BSY239_RS18440 (BSY239_3737) - 3962823..3963260 (-) 438 WP_236944102.1 PIN domain-containing protein -
  BSY239_RS18445 (BSY239_3738) - 3963263..3964609 (-) 1347 WP_069048075.1 THUMP domain-containing protein -
  BSY239_RS18450 (BSY239_3739) rpoN/rpoN1 3964701..3966341 (-) 1641 WP_069048076.1 RNA polymerase factor sigma-54 Machinery gene
  BSY239_RS18455 (BSY239_3740) lptB 3966347..3967141 (-) 795 WP_069048077.1 LPS export ABC transporter ATP-binding protein -
  BSY239_RS18460 (BSY239_3741) lptA 3967147..3967761 (-) 615 WP_069048078.1 lipopolysaccharide transport periplasmic protein LptA -
  BSY239_RS18465 (BSY239_3742) - 3967968..3968615 (-) 648 WP_069048079.1 thiol:disulfide interchange protein DsbA/DsbL -
  BSY239_RS18470 (BSY239_3743) - 3968693..3969358 (-) 666 WP_069049084.1 SPOR domain-containing protein -
  BSY239_RS18475 (BSY239_3744) argS 3969373..3971046 (-) 1674 WP_069048080.1 arginine--tRNA ligase -

Sequence

Protein


Download         Length: 546 a.a.        Molecular weight: 59917.38 Da        Isoelectric Point: 4.5508

>NTDB_id=188366 BSY239_RS18450 WP_069048076.1 3964701..3966341(-) (rpoN/rpoN1) [Hydrogenophaga sp. RAC07]
MKQGLSLRVSQHLALTPQLQQSIRLLQLSTLEMAQEVEQMLDENPFLERSEDAADRETFGLEQTDVPVSAGEQIAEAAIA
PDMPEAPGPMLSGTESSSSTSSDTGESDAIEGKLDGATPVEESWEGDGTVEMAPDDSEWGGDAPARNNNASGDDDTASAA
DLARAHISLQDFLHDQARCLRLSEEDRAALYFLIESLSDDGYIEDSLAELAAAWQALSGRMATDDPNEGLEEREALEQRL
AMALQLLQHMEPAGVGARNLAECLRLQILEMRNTPEARAALAICGQSMELVAKRDVKRLCNLCGLDDETVRGALGLIARL
EPKPGRRFVDVERNVVVPDVLVTRAGRGFKVLLNPEVMPRLRVHDAYASAMRQNRGGRDNGGEAGHAAMQQRLQEARWFI
KNIQQRFDTILRVSSAIVERQRNFFMHGELAMRPLVLREIADELGLHESTISRVTTAKYMSTPFGTYELKYFFGSSLGTE
TGGNASSTAVRALLKQFIAAEEAAKPLSDNQLSDLLREQGIECARRTVAKYREALRIAPANLRKSL

Nucleotide


Download         Length: 1641 bp        

>NTDB_id=188366 BSY239_RS18450 WP_069048076.1 3964701..3966341(-) (rpoN/rpoN1) [Hydrogenophaga sp. RAC07]
GTGAAACAAGGCCTGTCACTCAGGGTTTCGCAGCACCTGGCGCTCACGCCCCAGTTGCAGCAATCCATCCGCCTGCTGCA
ACTCTCCACGCTGGAGATGGCGCAGGAGGTCGAGCAGATGCTCGACGAGAACCCGTTCCTGGAGCGCTCCGAAGACGCCG
CCGACCGCGAAACTTTCGGGCTGGAGCAGACCGATGTGCCGGTCAGCGCGGGCGAGCAGATCGCCGAAGCGGCGATCGCG
CCCGACATGCCCGAGGCGCCCGGCCCCATGCTCTCCGGCACCGAATCCAGCAGCAGCACGAGCAGCGACACCGGCGAAAG
TGATGCCATCGAAGGCAAGCTCGACGGCGCCACGCCGGTGGAAGAAAGCTGGGAGGGCGACGGCACGGTGGAGATGGCGC
CCGACGACAGCGAGTGGGGCGGCGATGCCCCCGCGCGCAACAACAATGCGTCGGGCGACGACGACACGGCGAGTGCGGCC
GACCTGGCCCGCGCCCACATCAGCCTGCAGGACTTTCTGCACGACCAGGCGCGCTGCCTGCGCCTGTCGGAAGAGGACCG
CGCCGCGCTGTATTTCCTGATCGAGTCGCTCAGCGACGACGGTTACATCGAAGACAGCCTGGCCGAACTGGCCGCGGCCT
GGCAGGCACTGTCGGGCCGGATGGCCACCGACGACCCCAACGAGGGTCTGGAAGAACGCGAGGCGCTGGAGCAGCGCCTG
GCCATGGCCCTGCAACTGCTGCAGCACATGGAGCCCGCCGGCGTGGGCGCGCGCAACCTCGCCGAATGCCTGCGGCTGCA
GATCCTGGAGATGCGCAACACGCCCGAAGCCCGCGCGGCCCTGGCCATTTGTGGCCAGTCCATGGAGCTGGTGGCCAAGC
GTGATGTGAAGCGACTGTGCAACCTGTGCGGCCTGGACGACGAAACCGTGCGCGGCGCGCTCGGCCTCATCGCGCGGCTG
GAGCCCAAGCCGGGCCGCCGCTTCGTCGACGTGGAGCGCAACGTGGTCGTGCCCGATGTCTTGGTGACGCGTGCCGGTCG
GGGCTTCAAGGTCCTGCTCAACCCCGAGGTCATGCCGCGCCTGCGCGTGCACGATGCCTACGCCAGCGCCATGCGCCAGA
ACCGTGGCGGTCGCGACAACGGCGGTGAGGCCGGCCACGCCGCCATGCAGCAGCGCCTGCAGGAGGCGCGCTGGTTCATC
AAGAACATCCAGCAGCGCTTCGACACCATCCTGCGCGTCTCCAGCGCCATCGTGGAGCGCCAGCGCAATTTCTTCATGCA
CGGCGAACTCGCCATGCGCCCGCTGGTGCTGCGCGAGATCGCCGACGAACTCGGCCTGCACGAGTCCACCATCAGCCGCG
TGACCACCGCCAAATACATGTCCACGCCGTTCGGCACCTACGAACTGAAGTACTTCTTCGGCTCGTCGCTGGGCACCGAA
ACGGGCGGCAACGCGTCGAGCACGGCCGTGCGTGCGCTGCTCAAACAGTTCATCGCCGCCGAAGAAGCGGCCAAGCCTCT
GTCGGACAACCAGCTCTCCGACCTGCTGCGCGAGCAGGGCATCGAGTGCGCGCGCCGCACGGTGGCCAAGTACCGCGAAG
CCTTGCGGATCGCCCCCGCGAACCTTAGAAAATCGCTTTGA

Domains

Predicted by InterproScan.

Sigma-54 factor, core binding domain (Sigma54_CBD)

(161-367)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54, DNA binding domain (Sigma54_DBD)

(388-544)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1B3LXA9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

49.817

100

0.498

Multiple sequence alignment