Detailed information
Bioinformatically predicted
Overview
| Name | fimT | Type | Machinery gene |
| Locus tag | B7L39_RS10955 | Genome accession | NZ_CP020592 |
| Coordinates | 2320443..2320958 (+) | Length | 171 a.a. |
| NCBI ID | WP_000477147.1 | Uniprot ID | - |
| Organism | Acinetobacter baumannii strain USA2 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2315443..2325958
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| B7L39_RS10935 (B7L39_10935) | - | 2315762..2317222 (+) | 1461 | WP_000004971.1 | amino acid permease | - |
| B7L39_RS10940 (B7L39_10940) | - | 2317499..2318704 (+) | 1206 | WP_000512707.1 | RtcB family protein | - |
| B7L39_RS19440 | - | 2318723..2318866 (+) | 144 | WP_162138624.1 | hypothetical protein | - |
| B7L39_RS10950 (B7L39_10950) | omp38 | 2318991..2320061 (-) | 1071 | WP_000777882.1 | outer membrane protein Omp38 | - |
| B7L39_RS10955 (B7L39_10955) | fimT | 2320443..2320958 (+) | 516 | WP_000477147.1 | GspH/FimT family pseudopilin | Machinery gene |
| B7L39_RS10960 (B7L39_10960) | - | 2321067..2322242 (+) | 1176 | WP_000129968.1 | thiolase family protein | - |
| B7L39_RS10965 (B7L39_10965) | - | 2322369..2322812 (+) | 444 | WP_001176580.1 | VOC family protein | - |
| B7L39_RS10970 (B7L39_10970) | - | 2322855..2323208 (-) | 354 | WP_000457787.1 | DMT family transporter | - |
| B7L39_RS10975 (B7L39_10975) | - | 2323291..2323776 (-) | 486 | WP_000935249.1 | DUF934 domain-containing protein | - |
| B7L39_RS10980 (B7L39_10980) | - | 2323769..2325412 (-) | 1644 | WP_000281766.1 | nitrite/sulfite reductase | - |
Sequence
Protein
Download Length: 171 a.a. Molecular weight: 19587.81 Da Isoelectric Point: 8.4960
>NTDB_id=188342 B7L39_RS10955 WP_000477147.1 2320443..2320958(+) (fimT) [Acinetobacter baumannii strain USA2]
MFKSPGFTIVELTITLVILVIMSVIAIPLYHQFMASVELKNTPRILTIHIQKAKYDAIIRHKNVVLCPSSDQLVCNTNWD
NRVISFVDNNHNLQHDLNEELLTSIDLNHHYGSMKLQRFGKKQNSIIFQGSSGLPIESNGSFIYCSYDQLKNFKLILSKM
GHVRLEELKNC
MFKSPGFTIVELTITLVILVIMSVIAIPLYHQFMASVELKNTPRILTIHIQKAKYDAIIRHKNVVLCPSSDQLVCNTNWD
NRVISFVDNNHNLQHDLNEELLTSIDLNHHYGSMKLQRFGKKQNSIIFQGSSGLPIESNGSFIYCSYDQLKNFKLILSKM
GHVRLEELKNC
Nucleotide
Download Length: 516 bp
>NTDB_id=188342 B7L39_RS10955 WP_000477147.1 2320443..2320958(+) (fimT) [Acinetobacter baumannii strain USA2]
ATGTTTAAATCTCCTGGTTTTACTATAGTTGAGCTCACTATAACACTCGTAATTCTTGTGATTATGTCAGTTATAGCCAT
TCCTTTATACCATCAATTTATGGCATCTGTAGAACTAAAAAATACGCCGCGTATACTCACAATTCATATACAAAAAGCCA
AATATGACGCAATTATTAGGCATAAGAATGTTGTTCTTTGTCCAAGTTCTGATCAATTGGTCTGCAATACGAATTGGGAT
AACCGCGTAATCAGCTTTGTAGATAATAACCATAATCTACAGCATGATTTAAATGAAGAGTTATTAACCTCTATAGATCT
TAACCATCACTACGGTTCTATGAAATTACAACGTTTTGGAAAAAAACAAAATAGTATTATTTTTCAAGGTAGTTCTGGAC
TACCCATCGAGTCGAATGGCAGTTTTATCTATTGTTCTTATGACCAGCTTAAAAACTTTAAATTAATTCTTAGCAAAATG
GGCCATGTGCGCTTAGAAGAACTTAAAAATTGTTAG
ATGTTTAAATCTCCTGGTTTTACTATAGTTGAGCTCACTATAACACTCGTAATTCTTGTGATTATGTCAGTTATAGCCAT
TCCTTTATACCATCAATTTATGGCATCTGTAGAACTAAAAAATACGCCGCGTATACTCACAATTCATATACAAAAAGCCA
AATATGACGCAATTATTAGGCATAAGAATGTTGTTCTTTGTCCAAGTTCTGATCAATTGGTCTGCAATACGAATTGGGAT
AACCGCGTAATCAGCTTTGTAGATAATAACCATAATCTACAGCATGATTTAAATGAAGAGTTATTAACCTCTATAGATCT
TAACCATCACTACGGTTCTATGAAATTACAACGTTTTGGAAAAAAACAAAATAGTATTATTTTTCAAGGTAGTTCTGGAC
TACCCATCGAGTCGAATGGCAGTTTTATCTATTGTTCTTATGACCAGCTTAAAAACTTTAAATTAATTCTTAGCAAAATG
GGCCATGTGCGCTTAGAAGAACTTAAAAATTGTTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| fimT | Acinetobacter baylyi ADP1 |
43.373 |
97.076 |
0.421 |