Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   BSY15_RS08360 Genome accession   NZ_CP016447
Coordinates   1886877..1888256 (+) Length   459 a.a.
NCBI ID   WP_069104417.1    Uniprot ID   -
Organism   Acidovorax sp. RAC01     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1881877..1893256
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSY15_RS08340 (BSY15_1687) - 1882341..1883927 (+) 1587 WP_069104413.1 ABC transporter substrate-binding protein -
  BSY15_RS08345 (BSY15_1688) - 1884189..1884812 (-) 624 WP_069104414.1 glutathione S-transferase N-terminal domain-containing protein -
  BSY15_RS08350 (BSY15_1689) - 1884886..1885863 (-) 978 WP_069104415.1 2-dehydropantoate 2-reductase -
  BSY15_RS08355 (BSY15_1690) - 1885910..1886761 (-) 852 WP_069104416.1 HpcH/HpaI aldolase/citrate lyase family protein -
  BSY15_RS08360 (BSY15_1691) radA 1886877..1888256 (+) 1380 WP_069104417.1 DNA repair protein RadA Machinery gene
  BSY15_RS08365 (BSY15_1692) - 1888341..1888775 (+) 435 WP_069104418.1 glycerate kinase -
  BSY15_RS08370 (BSY15_1693) - 1888815..1889753 (+) 939 WP_069104419.1 branched-chain amino acid transaminase -
  BSY15_RS08375 (BSY15_1694) - 1889859..1890884 (+) 1026 WP_156779077.1 glycosyltransferase -
  BSY15_RS08380 (BSY15_1695) - 1890953..1891159 (+) 207 WP_069104421.1 zinc-finger domain-containing protein -
  BSY15_RS08385 (BSY15_1696) - 1891166..1891906 (-) 741 WP_069106494.1 glycosyltransferase family 25 protein -
  BSY15_RS08390 (BSY15_1697) - 1891924..1892652 (-) 729 WP_156779078.1 hypothetical protein -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 48108.67 Da        Isoelectric Point: 6.8925

>NTDB_id=188319 BSY15_RS08360 WP_069104417.1 1886877..1888256(+) (radA) [Acidovorax sp. RAC01]
MAKEKTTFTCTECGGTSPRWLGKCPSCGAWNTLIEQVAEAAPGKNRLSAPQGYAGLANVQPVLPLAAIEAQDVARTPSGI
DELDRVLGGGIVEGGVVLIGGDPGIGKSTLLLQAMDALQRAGLPTLYVTGEESGAQVALRSRRLGIDGSQVQLLAEIQLE
KILATVEVTQPAVVVIDSIQTTYSDQLTSAPGSVAQVRECAAHLTRMAKGTGIAVILVGHVTKEGALAGPRVLEHMVDTV
LYFEGDTHSQFRLVRAIKNRFGAVNEIGVFAMTEKGLKGVSNPSAIFLSQHSEPVPGSCVMVTLEGTRPLLVEIQALVDT
GGPSPRRLSVGLDKDRLAMLLAVLHRHAGVACMDQDVFVNAVGGVRISEPAADLAVMLAITSSLRGKALPRGFLAFGEVG
LAGEVRPAPRGQERLKEAAKLGFSVAVVPKANAPKKPIEGLTIHAVERVDEAMDVVRGM

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=188319 BSY15_RS08360 WP_069104417.1 1886877..1888256(+) (radA) [Acidovorax sp. RAC01]
ATGGCCAAAGAAAAAACCACGTTCACCTGCACCGAGTGCGGCGGCACCAGCCCGCGCTGGCTGGGCAAGTGCCCGTCCTG
CGGCGCCTGGAACACGCTGATCGAGCAGGTGGCCGAGGCCGCGCCGGGCAAGAACCGGCTGAGCGCGCCGCAGGGCTACG
CGGGCCTGGCCAATGTGCAGCCGGTGCTGCCGCTGGCCGCCATCGAAGCGCAGGACGTGGCGCGCACGCCCAGCGGCATC
GACGAGCTGGACCGCGTGCTGGGCGGCGGCATTGTGGAGGGCGGCGTAGTGCTCATCGGCGGCGACCCGGGCATTGGCAA
ATCAACCCTGCTGCTGCAGGCCATGGACGCGCTGCAGCGCGCCGGGCTGCCCACGCTGTATGTGACGGGCGAGGAGAGCG
GCGCGCAGGTAGCGTTGCGCTCGCGCCGCCTGGGCATTGACGGCAGCCAGGTGCAGCTGCTGGCCGAGATCCAGCTGGAG
AAGATCCTGGCCACGGTGGAGGTCACGCAGCCTGCGGTGGTCGTCATCGACTCCATCCAGACCACGTATTCGGACCAGCT
CACCAGCGCGCCGGGCTCGGTCGCGCAAGTGCGTGAATGCGCGGCGCACCTCACGCGCATGGCCAAGGGCACGGGCATCG
CCGTGATTCTGGTCGGCCACGTCACCAAGGAGGGCGCGCTGGCGGGCCCCCGCGTGCTGGAGCACATGGTGGACACGGTG
CTGTACTTTGAAGGCGACACGCACAGCCAGTTTCGCCTGGTGCGCGCCATCAAGAACCGCTTTGGTGCCGTGAACGAGAT
CGGCGTGTTCGCCATGACCGAGAAGGGCCTCAAGGGCGTGAGCAACCCCAGCGCCATCTTCCTCTCGCAGCACAGCGAGC
CTGTACCGGGCAGTTGCGTGATGGTGACGCTGGAGGGCACGCGCCCGCTGCTGGTGGAGATTCAGGCCCTGGTCGACACC
GGCGGCCCCAGCCCGCGGCGCCTGAGCGTGGGCCTGGACAAGGACCGCCTGGCCATGCTGCTGGCCGTGTTGCACCGCCA
CGCAGGCGTGGCCTGCATGGACCAGGATGTGTTTGTGAACGCGGTGGGCGGCGTGCGCATCAGTGAGCCGGCGGCCGACC
TGGCGGTGATGCTGGCCATTACGTCCAGCCTGCGCGGCAAGGCGCTGCCCCGCGGCTTTCTGGCCTTTGGCGAGGTGGGG
CTGGCGGGCGAGGTGCGCCCTGCGCCGCGCGGGCAGGAGCGGCTGAAGGAAGCTGCCAAGCTGGGCTTTTCCGTGGCCGT
GGTGCCCAAGGCCAATGCGCCCAAGAAGCCCATCGAGGGCCTGACCATCCACGCGGTCGAGCGCGTGGATGAGGCCATGG
ACGTGGTGCGGGGCATGTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(68-225)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.904

99.346

0.486
  radA Streptococcus mitis NCTC 12261

47.137

98.911

0.466
  radA Streptococcus pneumoniae Rx1

48.956

93.9

0.46
  radA Streptococcus pneumoniae D39

48.956

93.9

0.46
  radA Streptococcus pneumoniae R6

48.956

93.9

0.46
  radA Streptococcus pneumoniae TIGR4

48.956

93.9

0.46
  radA Streptococcus mitis SK321

48.956

93.9

0.46

Multiple sequence alignment