Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   BAY21_RS04840 Genome accession   NZ_CP016439
Coordinates   909889..910656 (-) Length   255 a.a.
NCBI ID   WP_011226714.1    Uniprot ID   Q5M227
Organism   Streptococcus thermophilus strain CS8     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 904889..915656
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAY21_RS04820 (BAY21_04820) ychF 905424..906539 (-) 1116 WP_002948588.1 redox-regulated ATPase YchF -
  BAY21_RS04825 (BAY21_04825) - 906752..906943 (-) 192 WP_011226716.1 DUF951 domain-containing protein -
  BAY21_RS04830 (BAY21_04830) dnaN 906994..908130 (-) 1137 WP_011226715.1 DNA polymerase III subunit beta -
  BAY21_RS04835 (BAY21_04835) dnaA 908285..909649 (-) 1365 WP_002948584.1 chromosomal replication initiator protein DnaA -
  BAY21_RS04840 (BAY21_04840) spo0J 909889..910656 (-) 768 WP_011226714.1 ParB/RepB/Spo0J family partition protein Regulator
  BAY21_RS04845 (BAY21_04845) htrA 910722..911957 (-) 1236 WP_065429503.1 S1C family serine protease Regulator
  BAY21_RS04850 (BAY21_04850) rlmH 912162..912641 (+) 480 WP_011226712.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  BAY21_RS04855 (BAY21_04855) - 912657..913340 (+) 684 WP_011226711.1 YoaK family protein -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29485.94 Da        Isoelectric Point: 9.6649

>NTDB_id=188251 BAY21_RS04840 WP_011226714.1 909889..910656(-) (spo0J) [Streptococcus thermophilus strain CS8]
MSEQLKTLSISEIYPNPFQPRLKFSDEELVELSQSISENGLIQPIIVRKSDIIGYELIAGERRLRACKRLGMTEIPAVVK
EVTDQESRKQAIIENLQRSNLNPIEEAKAYRNLIDELTYSHEELAKAMGKSRPYISNALRLLQLPREIQTSIENGSLSQG
HARALLAIEDSRKQLTIFQQVVAERWSVRTLEKKLQELPRKQKSKKDIHVKDKEKELERLLGLPITLRYHKNHSGTIQIH
FSTEEDFNRIINKLI

Nucleotide


Download         Length: 768 bp        

>NTDB_id=188251 BAY21_RS04840 WP_011226714.1 909889..910656(-) (spo0J) [Streptococcus thermophilus strain CS8]
ATGTCAGAACAACTCAAAACTTTATCTATTAGTGAAATTTACCCCAATCCTTTTCAACCTCGTCTAAAATTCTCCGATGA
AGAGTTAGTAGAACTAAGTCAATCAATATCAGAAAATGGTTTAATACAGCCAATTATTGTACGAAAATCTGACATTATTG
GTTATGAACTAATTGCTGGAGAAAGACGTTTACGAGCCTGTAAACGTTTAGGGATGACAGAAATCCCTGCAGTTGTAAAG
GAAGTTACAGATCAAGAGAGTCGTAAACAAGCTATTATTGAAAATCTACAACGATCAAATCTCAATCCTATTGAAGAAGC
AAAGGCCTATCGTAATTTAATTGATGAGTTAACTTATAGTCACGAGGAGCTCGCTAAAGCTATGGGAAAATCTAGACCAT
ATATTAGTAACGCTCTTAGACTACTACAACTTCCGCGAGAGATACAAACGAGTATTGAAAACGGAAGTCTGAGTCAGGGA
CATGCTAGAGCACTCTTAGCTATTGAGGATTCTCGAAAGCAGTTAACCATCTTTCAGCAGGTTGTGGCTGAAAGATGGTC
TGTTCGTACTCTAGAAAAAAAACTTCAGGAACTTCCTAGAAAACAAAAATCTAAAAAAGATATCCATGTAAAAGATAAAG
AAAAAGAACTTGAAAGATTACTAGGTCTCCCTATAACTCTACGTTATCACAAAAATCACTCAGGAACGATTCAAATACAC
TTTTCGACAGAAGAAGATTTTAACAGAATTATCAACAAGCTTATCTAA

Domains

Predicted by InterproScan.

HTH domain found in ParB protein (HTH_ParB)

(147-196)

ParB/Sulfiredoxin domain (ParB_N)

(8-95)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5M227

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

56.863

100

0.569

Multiple sequence alignment