Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   BAY21_RS02645 Genome accession   NZ_CP016439
Coordinates   508395..508838 (-) Length   147 a.a.
NCBI ID   WP_002945408.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain CS8     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 503395..513838
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAY21_RS09710 - 504405..504653 (-) 249 WP_011225562.1 hypothetical protein -
  BAY21_RS02635 (BAY21_02635) rcrQ 504809..506587 (-) 1779 WP_011226912.1 ABC transporter ATP-binding protein Regulator
  BAY21_RS02640 (BAY21_02640) rcrP 506577..508391 (-) 1815 WP_011225560.1 ABC transporter ATP-binding protein Regulator
  BAY21_RS02645 (BAY21_02645) rcrR 508395..508838 (-) 444 WP_002945408.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  BAY21_RS02650 (BAY21_02650) - 509030..509440 (-) 411 WP_011225559.1 peptide deformylase -
  BAY21_RS02655 (BAY21_02655) gdhA 509699..511051 (-) 1353 WP_011680803.1 NADP-specific glutamate dehydrogenase -
  BAY21_RS02660 (BAY21_02660) - 511395..512501 (+) 1107 WP_011226911.1 AAA family ATPase -
  BAY21_RS02665 (BAY21_02665) - 512565..513317 (+) 753 WP_011226910.1 NUDIX domain-containing protein -

Sequence

Protein


Download         Length: 147 a.a.        Molecular weight: 17031.41 Da        Isoelectric Point: 9.5790

>NTDB_id=188233 BAY21_RS02645 WP_002945408.1 508395..508838(-) (rcrR) [Streptococcus thermophilus strain CS8]
MHGKDPFSDFREFINTMESRVQELGKAYGVEHLAGPQGFAVRYLFENQDKEIFIKDIEKKLSISKSVASNLVKRMEKNGF
VELVTSDKDKRYKYVHLTDLGKKKAQDVGHFREAIHGQLLDGISKEDAETAFRVFHQIRKNLEKNKE

Nucleotide


Download         Length: 444 bp        

>NTDB_id=188233 BAY21_RS02645 WP_002945408.1 508395..508838(-) (rcrR) [Streptococcus thermophilus strain CS8]
ATGCATGGGAAAGATCCTTTTAGTGACTTCAGAGAATTCATCAATACTATGGAGTCTCGCGTGCAAGAGTTAGGTAAAGC
GTATGGCGTTGAGCATTTAGCTGGTCCACAAGGGTTTGCCGTTAGGTACTTGTTTGAGAACCAAGATAAAGAAATATTTA
TCAAAGATATTGAGAAAAAACTATCTATTTCCAAGTCAGTGGCTAGTAATTTGGTCAAACGTATGGAGAAAAATGGTTTT
GTTGAATTGGTGACATCTGACAAGGACAAACGCTACAAGTATGTTCATCTGACAGACTTAGGCAAAAAGAAGGCTCAAGA
CGTCGGACATTTCCGAGAGGCTATCCATGGACAGTTATTAGATGGTATTTCGAAAGAAGATGCTGAAACAGCATTTCGAG
TCTTTCACCAAATTCGTAAGAATTTAGAGAAAAATAAGGAGTAA

Domains

Predicted by InterproScan.

MarR family (MarR_2)

(42-91)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

56.028

95.918

0.537

Multiple sequence alignment