Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   VSVS05_RS15350 Genome accession   NZ_CP016415
Coordinates   178590..179774 (+) Length   394 a.a.
NCBI ID   WP_065546093.1    Uniprot ID   A0A1C7FFR0
Organism   Vibrio scophthalmi strain VS-05     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 173590..184774
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VSVS05_RS15330 (VSVS05_03132) - 174158..175585 (+) 1428 WP_065546089.1 DUF1116 domain-containing protein -
  VSVS05_RS15335 (VSVS05_03133) - 175582..176532 (+) 951 WP_065546090.1 carbamate kinase -
  VSVS05_RS15340 (VSVS05_03134) - 176576..176965 (+) 390 WP_065546091.1 glutamyl-tRNA amidotransferase -
  VSVS05_RS15345 (VSVS05_03135) - 177068..178315 (+) 1248 WP_065546092.1 cytosine permease -
  VSVS05_RS15350 (VSVS05_03136) cqsA 178590..179774 (+) 1185 WP_065546093.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  VSVS05_RS15355 (VSVS05_03138) - 180296..180553 (-) 258 WP_065546094.1 hypothetical protein -
  VSVS05_RS15360 (VSVS05_03139) - 180624..181460 (+) 837 WP_065546095.1 alpha/beta fold hydrolase -
  VSVS05_RS15365 (VSVS05_03140) - 181549..182445 (-) 897 WP_065546096.1 hypothetical protein -
  VSVS05_RS15370 (VSVS05_03141) - 183066..183398 (+) 333 WP_231893196.1 hypothetical protein -

Sequence

Protein


Download         Length: 394 a.a.        Molecular weight: 43626.94 Da        Isoelectric Point: 7.0402

>NTDB_id=188174 VSVS05_RS15350 WP_065546093.1 178590..179774(+) (cqsA) [Vibrio scophthalmi strain VS-05]
MCNGRKNKILPSFIEERLDFYIADLIASNDNKKHLVLGKRPSNDAVVMQSNDYLSLSNHKEILQAHGKAILGLNDNVVMS
AIFLQDSESKPAFEVQLADYVGMESCLISQSGWAANIGLLQTICTENSPVYIDFFAHMSLWEGIRYAGAKAHPFMHNNIK
HLRRQIKRHGAGVIVVDSVYSTIGTIAPLRDIYEIAREFNCTLIVDESHSIGTHGPKGAGLVKALELNDQVDFITLSLAK
TFAYRAGAILGPTKLAKTLPFVAYPAIFSSTVLPQELVRLEKTLEVIKGADARRAKLFNNAEAIASGLRNIGFRIQSESQ
IIALECGSERNTERVRDFLEQRDVFGAVFCRPATGKNNNIIRFSINVDLTASDIDRVLSTCQEAFNHPELEFAS

Nucleotide


Download         Length: 1185 bp        

>NTDB_id=188174 VSVS05_RS15350 WP_065546093.1 178590..179774(+) (cqsA) [Vibrio scophthalmi strain VS-05]
ATGTGTAATGGACGTAAAAACAAAATACTTCCTTCATTTATTGAAGAACGCTTGGATTTTTATATTGCTGATCTGATTGC
AAGTAATGACAACAAAAAACACTTAGTATTAGGCAAGCGACCATCCAATGATGCGGTGGTGATGCAAAGTAATGATTACT
TATCACTGTCCAATCATAAGGAGATTCTACAAGCGCATGGCAAGGCCATTTTGGGGCTCAATGACAACGTCGTTATGTCG
GCGATTTTTTTGCAAGATAGTGAGTCGAAGCCCGCTTTTGAGGTTCAACTGGCGGATTATGTTGGTATGGAAAGTTGCCT
CATTTCTCAATCTGGATGGGCAGCAAATATTGGCTTACTCCAGACGATTTGTACCGAGAATTCACCCGTGTATATTGATT
TTTTTGCCCATATGTCGCTTTGGGAAGGCATTCGATATGCTGGTGCGAAGGCTCATCCATTTATGCACAACAACATAAAA
CACCTGCGCCGACAAATTAAACGCCATGGGGCAGGTGTGATTGTTGTGGACTCTGTCTACAGTACTATCGGAACGATAGC
GCCACTGCGTGATATCTACGAAATAGCACGTGAATTTAACTGTACGTTAATCGTAGATGAATCCCATTCAATAGGGACTC
ACGGCCCGAAAGGCGCAGGGTTAGTAAAAGCACTAGAACTCAATGACCAAGTGGATTTTATTACTTTAAGCTTAGCCAAA
ACCTTTGCTTATCGCGCTGGTGCTATATTAGGCCCGACTAAACTGGCTAAGACGCTACCATTTGTTGCTTATCCCGCGAT
ATTTAGCTCGACCGTATTACCTCAAGAACTTGTGCGTCTAGAGAAAACGTTAGAGGTGATTAAAGGAGCAGATGCTAGGC
GAGCAAAACTGTTTAACAACGCAGAGGCCATAGCATCAGGGTTGAGGAATATTGGTTTTCGCATCCAGAGCGAGTCACAG
ATTATCGCTTTAGAATGTGGGAGTGAGAGGAATACTGAACGTGTGCGTGATTTCTTGGAGCAACGAGATGTGTTTGGCGC
AGTGTTTTGTCGGCCAGCCACTGGGAAAAACAACAACATCATTCGCTTTTCAATAAATGTAGATTTGACAGCTTCTGATA
TCGACCGTGTGTTATCTACGTGCCAAGAAGCGTTTAATCATCCCGAGTTAGAGTTCGCGTCATAG

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(46-377)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C7FFR0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

56.658

97.208

0.551

Multiple sequence alignment