Detailed information NTG0188158

Bioinformatically predicted

Overview

• Name: chiS
• Type: Regulator
• Locus tag: VSVS05_RS11165
• Genome accession: NZ_CP016414
• Coordinates: 2464890..2468273 (+)
• Length: 1127 a.a.
• NCBI ID: WP_065545692.1
• Uniprot ID: -
• Organism: Vibrio scophthalmi strain VS-05
• Function: chitin sensor (predicted from homology) Competence regulation

Genomic Context

Location: 2459890..2473273

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VSVS05_RS11140 (VSVS05_02283)	erpA	2460229..2460570 (-)	342	WP_005593244.1	iron-sulfur cluster insertion protein ErpA	-
VSVS05_RS11145 (VSVS05_02284)	hemL	2460856..2462148 (+)	1293	WP_005593243.1	glutamate-1-semialdehyde 2,1-aminomutase	-
VSVS05_RS11155 (VSVS05_02285)	-	2462492..2463577 (+)	1086	WP_005593240.1	AI-2E family transporter	-
VSVS05_RS11160 (VSVS05_02286)	rsmC	2463674..2464696 (+)	1023	WP_009733666.1	16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC	-
VSVS05_RS11165 (VSVS05_02287)	chiS	2464890..2468273 (+)	3384	WP_065545692.1	response regulator	Regulator
VSVS05_RS11170 (VSVS05_02288)	-	2468916..2470598 (+)	1683	WP_005593237.1	ABC transporter substrate-binding protein	-
VSVS05_RS11175 (VSVS05_02289)	-	2470771..2471757 (+)	987	WP_005593236.1	ABC transporter permease	-
VSVS05_RS11180 (VSVS05_02290)	-	2471760..2472785 (+)	1026	WP_005593235.1	ABC transporter permease	-

Sequence

Protein

• Length: 1127 a.a.
• Molecular weight: 127470.60 Da
• Isoelectric Point: 5.5251

>NTDB_id=188158 VSVS05_RS11165 WP_065545692.1 2464890..2468273(+) (chiS) [Vibrio scophthalmi strain VS-05]
MFKLYRKQRFKRLQNTLMLAFLALSITPLTVIALFFLNSHSQDLQEQSTSHLLSVRDSKHQQIVDYLDARESEVMGFVRS
ELAYASGGRFYGLVNAFQSLGLDINQARDYAQQRYIQGSGNQIKTSILPQSDIYNGTERYRLLHTRYHRAYLELLKRSDF
DDILLVDINGNVTYSIYKNDNFGTNLISGKYKDDNLGLAFQKLKKNVTSVRKTNEDYTPVFFSDFETHHGKSYAWIGAPI
IQQGYLHSYAMFRLPNNSLTKLMADNNNIWSIKTLLVGEDHKPRTLAYSQEEVDNSLTIIDRAFNNPASVGTFTNALGEE
IIAAYSHIQTKGIDWALVVEVAEKEAFARVQQLERLFVFAMLFAIIVVVIASHYLSNFITLPLLKLTWSAEKASAGDLNA
EINTQRKDEIGRLAIAFDRMQRSIRDKIQLIREQNEELEDNLTIIQKKNDELQLANKLKDEFLATTSHELRTPLHGMIGI
AEALISGASGPITADHKYQLDIIISSGQRLTTLVDDLLDYHKMRYGNLDIETCGVDLSSATRLVLELSSHLLGNKQIRII
NQVAAEPVWVAADPQRLEQVLYNLVGNAIKYTREGKIVISATVVDDKIRVQVVDTGQGIPADQIEHIFEPLIQASDDASR
YRQGAGLGLSISRQLVELMDGSLYVSSQPMVGTTFSFTLPIATEAQIAQASHNDSIHFKVPESYELEETSISSLPENPDG
QLLLVVDDEPVNLRVLDSFLRIAGYRVRTAKDGFEALQQIEQERPELVLLDVMMPGLSGYQVCETIRENYSQSELPVIML
TALNQPDDRIRGFNSGANDYLSKPFNKQELAARILVHLSASQAELRKAENHRLQQELKQRAAVEASLLETQGRLLEQLES
APEAIICIRDDGRIRFANEAAARLFKRSTEQLKRSNADEILGPKFLDVEQEHYCGKVDIYVEDTRQHLDADILRLPLESG
LKSMYIFDNGGGANAVRIHNLETAIEALSSYAFDGDKGKLQELKELGGEFTRLADRVTGEHKSKQEVMREVLVDAMTTAI
NYWENSSGQTKFAFAEQSGLWRVYLDRSTLQTRTLDKYLRIETLPKTPRWRTVLSSLEYILDNSHEMNAERALIEELRDK
LQHLLTS

Nucleotide

• Length: 3384 bp

>NTDB_id=188158 VSVS05_RS11165 WP_065545692.1 2464890..2468273(+) (chiS) [Vibrio scophthalmi strain VS-05]
ATGTTTAAGTTGTATCGAAAACAAAGATTCAAACGCCTGCAAAATACACTCATGCTGGCATTTTTGGCGCTCAGTATCAC
GCCTCTAACTGTGATCGCCCTCTTCTTCCTCAATTCGCACAGCCAAGATCTCCAAGAGCAAAGCACTTCACATCTTCTCT
CTGTGCGAGATAGTAAGCATCAACAGATTGTTGATTATCTTGATGCACGCGAATCGGAAGTGATGGGGTTTGTCCGTTCA
GAGCTCGCTTACGCCAGTGGCGGCCGCTTCTATGGCTTAGTCAATGCGTTCCAAAGCCTCGGTTTGGACATCAACCAGGC
TCGTGATTATGCGCAGCAACGCTATATTCAAGGCTCTGGGAATCAGATTAAAACGTCAATTTTGCCGCAATCGGACATTT
ATAACGGTACAGAGCGCTATCGCTTACTACATACTCGTTATCATCGCGCCTATTTAGAACTGTTAAAACGTTCTGATTTT
GACGACATTTTGTTGGTCGATATTAACGGCAACGTTACCTATTCCATCTATAAAAACGATAACTTCGGTACCAACCTAAT
CTCTGGTAAATACAAAGACGATAACTTAGGTTTGGCCTTTCAAAAACTGAAGAAAAATGTCACGTCGGTACGTAAGACCA
ATGAAGACTACACGCCAGTGTTCTTCTCTGACTTCGAAACTCATCATGGAAAATCTTACGCTTGGATCGGTGCGCCAATC
ATCCAACAAGGCTACCTACATAGCTACGCGATGTTCCGTCTACCAAATAACAGCCTGACCAAATTGATGGCTGACAATAA
CAACATTTGGTCGATAAAAACCTTACTGGTTGGTGAAGACCACAAGCCACGCACCCTTGCTTATAGCCAAGAAGAGGTTG
ATAACAGCCTGACTATTATCGATCGTGCCTTTAATAATCCAGCGTCAGTAGGCACCTTTACCAATGCTCTCGGTGAAGAG
ATTATTGCCGCCTACAGCCATATCCAAACCAAAGGTATTGACTGGGCACTTGTGGTGGAAGTCGCTGAAAAAGAAGCCTT
TGCACGTGTACAACAACTTGAACGACTGTTTGTTTTTGCCATGCTGTTTGCCATTATCGTGGTGGTCATCGCTTCGCACT
ACCTCTCCAACTTCATCACGCTACCATTATTGAAATTAACATGGTCAGCAGAAAAAGCATCAGCCGGTGATCTCAATGCG
GAAATCAACACTCAACGTAAAGATGAGATTGGCCGACTCGCCATTGCATTTGATCGCATGCAGCGTTCGATTCGTGACAA
AATCCAGCTTATTCGCGAACAAAATGAAGAGCTGGAAGATAACCTCACGATAATCCAGAAGAAAAATGATGAATTGCAGC
TGGCCAACAAACTTAAAGATGAGTTTCTTGCCACCACTTCACACGAATTACGCACCCCACTGCATGGCATGATTGGCATT
GCAGAAGCGCTTATTTCGGGTGCAAGTGGGCCGATTACTGCCGATCATAAATATCAACTCGATATTATCATCAGCAGCGG
ACAACGCTTAACCACCTTGGTTGACGATCTACTCGACTATCACAAAATGCGTTATGGCAATCTTGACATCGAAACCTGTG
GTGTCGACTTATCGAGTGCCACTCGCCTTGTGCTAGAGCTCTCGTCACACCTACTGGGTAACAAACAGATCCGCATTATT
AACCAAGTGGCGGCTGAGCCAGTTTGGGTTGCGGCGGATCCACAACGTCTTGAACAGGTGCTTTATAATCTCGTTGGTAA
CGCGATCAAATACACCCGCGAAGGTAAAATTGTTATTTCTGCTACGGTAGTAGACGATAAAATCCGCGTGCAAGTGGTTG
ATACAGGCCAAGGCATTCCTGCCGACCAAATCGAGCATATTTTCGAACCATTAATCCAAGCCAGCGATGATGCCAGCCGC
TACCGTCAGGGTGCAGGCCTTGGTCTGTCTATTAGCCGCCAGTTAGTTGAATTGATGGATGGCTCACTCTATGTCAGCAG
CCAACCAATGGTCGGCACAACATTTAGCTTTACCTTACCGATTGCCACCGAAGCGCAAATCGCGCAAGCGAGCCATAATG
ATAGCATCCACTTTAAAGTGCCTGAGAGCTATGAACTAGAAGAAACAAGCATCAGTAGCCTACCTGAGAACCCTGATGGT
CAATTGCTGCTTGTTGTGGATGATGAACCGGTAAACTTAAGAGTATTGGACAGTTTCTTAAGAATCGCGGGCTATCGTGT
ACGCACGGCGAAAGATGGGTTTGAAGCCTTACAACAAATTGAACAAGAAAGACCGGAACTGGTGCTACTGGATGTGATGA
TGCCGGGCTTAAGTGGCTATCAAGTCTGTGAAACCATTCGTGAAAATTACAGCCAGTCAGAATTGCCTGTCATTATGCTA
ACCGCCTTAAACCAGCCTGATGACCGTATTCGTGGCTTCAATTCCGGCGCCAATGACTACTTATCAAAACCATTCAATAA
ACAAGAGCTGGCGGCCCGTATTTTAGTGCACCTCTCAGCAAGCCAAGCTGAATTGCGTAAAGCGGAAAACCACCGTTTAC
AGCAGGAATTAAAACAACGCGCCGCCGTGGAAGCGAGCTTGCTCGAAACACAAGGTCGATTGTTAGAACAACTTGAATCT
GCTCCAGAAGCGATAATCTGTATCCGGGACGATGGTCGAATTCGCTTTGCTAACGAAGCGGCAGCACGACTGTTTAAACG
CAGCACCGAACAGCTAAAACGTTCAAATGCAGACGAAATTTTAGGCCCTAAGTTCCTTGATGTTGAGCAAGAGCACTATT
GCGGTAAGGTTGATATCTACGTTGAGGATACCCGCCAACATCTCGATGCCGACATTCTGCGTCTGCCACTGGAATCAGGC
CTTAAGTCAATGTACATCTTTGATAATGGCGGCGGCGCCAATGCGGTGCGTATTCACAACCTAGAGACCGCCATAGAGGC
ACTTTCAAGCTATGCGTTTGACGGTGACAAGGGCAAGTTACAAGAGCTCAAAGAATTAGGCGGTGAATTTACTCGCCTTG
CTGACCGTGTCACAGGTGAACATAAGTCGAAACAGGAAGTGATGCGCGAAGTATTGGTGGATGCAATGACAACCGCAATC
AATTACTGGGAAAACAGTTCAGGCCAAACCAAGTTTGCCTTTGCCGAGCAAAGTGGTTTATGGCGCGTCTATCTAGACCG
CAGCACTCTGCAAACGCGTACCTTGGATAAATACCTACGTATCGAAACGCTACCGAAAACACCACGTTGGCGTACCGTAC
TGAGCTCACTGGAATATATTCTTGATAACAGCCACGAGATGAATGCCGAACGAGCACTGATTGAAGAGCTGCGAGATAAG
CTTCAACACCTACTGACCAGTTAG

Domains

Predicted by InterproScan.

• HAMP domain (HAMP) (375-426)

• Response regulator receiver domain (Response_reg) (724-834)

• Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c) (573-681)

• His Kinase A (phospho-acceptor) domain (HisKA) (459-524)

• PAS domain (PAS_8) (878-925)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
chiS	Vibrio cholerae strain A1552	74.202	100	0.743