Detailed information NTG0188137

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: VSVS05_RS00965
• Genome accession: NZ_CP016414
• Coordinates: 184080..185063 (+)
• Length: 327 a.a.
• NCBI ID: WP_065544998.1
• Uniprot ID: A0A1C7F621
• Organism: Vibrio scophthalmi strain VS-05
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 179080..190063

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VSVS05_RS00935 (VSVS05_00191)	ispD	179320..180042 (+)	723	WP_065430962.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
VSVS05_RS00940 (VSVS05_00192)	ispF	180046..180525 (+)	480	WP_040758003.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
VSVS05_RS00945 (VSVS05_00193)	truD	180597..181679 (+)	1083	WP_065544997.1	tRNA pseudouridine(13) synthase TruD	-
VSVS05_RS00950 (VSVS05_00194)	surE	181706..182449 (+)	744	WP_005598101.1	5'/3'-nucleotidase SurE	-
VSVS05_RS00955 (VSVS05_00195)	-	182453..183079 (+)	627	WP_009387609.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
VSVS05_RS00960 (VSVS05_00196)	nlpD	183082..184002 (+)	921	WP_005598103.1	murein hydrolase activator NlpD	-
VSVS05_RS00965 (VSVS05_00197)	rpoS	184080..185063 (+)	984	WP_065544998.1	RNA polymerase sigma factor RpoS	Regulator
VSVS05_RS00970 (VSVS05_00198)	-	185236..186510 (-)	1275	WP_065544999.1	HlyC/CorC family transporter	-
VSVS05_RS00975 (VSVS05_00199)	-	186639..187433 (-)	795	WP_005593965.1	cytochrome C assembly family protein	-
VSVS05_RS00980 (VSVS05_00200)	ffh	187616..188995 (+)	1380	WP_005593966.1	signal recognition particle protein	-
VSVS05_RS00985 (VSVS05_00201)	rpsP	189207..189455 (+)	249	WP_005593968.1	30S ribosomal protein S16	-
VSVS05_RS00990 (VSVS05_00202)	rimM	189480..190034 (+)	555	WP_005593970.1	ribosome maturation factor RimM	-

Sequence

Protein

• Length: 327 a.a.
• Molecular weight: 37411.48 Da
• Isoelectric Point: 4.7809

>NTDB_id=188137 VSVS05_RS00965 WP_065544998.1 184080..185063(+) (rpoS) [Vibrio scophthalmi strain VS-05]
MSMSNTATKVEEFDLNNMETLEVEAQTAKKSASANAAAKEEYEVSNKSLDATQLYLGEIGFSPLLTAEEEVLYARRTLRG
DEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIR
LPIHVVKELNIYLRTARELSQKLDHEPTAEEIAIQLDKPVDDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDVKHSDP
EVSTQDDDIKDSLINWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILIKQGLSMEN
LFSVEDD

Nucleotide

• Length: 984 bp

>NTDB_id=188137 VSVS05_RS00965 WP_065544998.1 184080..185063(+) (rpoS) [Vibrio scophthalmi strain VS-05]
ATGAGTATGAGCAATACAGCAACAAAAGTTGAAGAATTTGATCTCAATAACATGGAAACGTTAGAGGTTGAAGCACAAAC
CGCAAAAAAATCCGCATCAGCTAATGCAGCTGCGAAAGAAGAGTATGAGGTCTCGAATAAGAGCCTTGATGCGACGCAGC
TTTACCTTGGCGAAATCGGCTTTTCACCACTACTTACCGCAGAAGAAGAAGTGCTTTATGCTCGCCGTACCTTGCGTGGT
GATGAAGCAGCGCGTAAACGTATGATCGAAAGTAACCTGCGTTTGGTGGTGAAGATTTCTCGTCGTTACAGCAATCGTGG
TCTTGCACTGCTTGATTTGATTGAAGAAGGTAACTTAGGTCTGATCCGAGCGGTTGAAAAATTTGATCCAGAGCGTGGCT
TCCGTTTTTCAACGTATGCTACTTGGTGGATTCGTCAAACCATTGAACGTGCGTTGATGAACCAAACCCGCACAATTCGT
CTACCGATTCACGTCGTTAAAGAGCTGAATATTTATCTGCGTACCGCTCGCGAGCTTTCACAAAAGCTTGACCATGAGCC
AACGGCAGAAGAGATTGCAATTCAATTAGATAAGCCAGTTGATGATGTGAGTAAAATGCTACGCCTGAATGAGCGTATTA
GTTCGGTTGATACCCCAATTGGTGGTGATGGTGAAAAAGCACTGTTGGACATTATTCCTGATGTGAAGCATTCAGATCCT
GAAGTATCAACACAAGATGATGATATTAAGGATTCATTGATTAATTGGCTTGATGAGTTAAACCCTAAGCAAAAAGAAGT
TTTAGCGCGCCGTTTTGGTCTGCTTGGGTATGAACCATCAACACTTGAAGAAGTGGGACGCGAGATTAATCTAACACGTG
AGCGTGTGCGTCAGATTCAAGTAGAAGGTCTACGTCGTTTACGTGAAATCTTGATTAAACAAGGTTTGAGCATGGAAAAC
CTGTTCAGCGTCGAAGACGACTAA

Domains

Predicted by InterproScan.

• Sigma-70 region 3 (Sigma70_r3) (168-241)

• Sigma-70, region 4 (Sigma70_r4) (256-309)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (50-83)

• Sigma-70 region 2 (Sigma70_r2) (88-157)

3D structure

• AlphaFold DB: A0A1C7F621

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	82.934	100	0.847