Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ATD18_RS09820 Genome accession   NZ_CP016406
Coordinates   1968849..1969454 (+) Length   201 a.a.
NCBI ID   WP_001202375.1    Uniprot ID   A0A5I0N148
Organism   Salmonella enterica subsp. enterica serovar Infantis strain FSIS1502169     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1963849..1974454
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ATD18_RS09800 (ATD18_09365) - 1964244..1966004 (-) 1761 WP_000156457.1 Lon protease family protein -
  ATD18_RS09805 (ATD18_09370) matP 1966190..1966642 (+) 453 WP_000877172.1 macrodomain Ter protein MatP -
  ATD18_RS09810 (ATD18_09375) ompA 1966714..1967766 (-) 1053 WP_001670727.1 porin OmpA -
  ATD18_RS09815 (ATD18_09380) sulA 1968123..1968632 (-) 510 WP_000288732.1 SOS-induced cell division inhibitor SulA -
  ATD18_RS09820 (ATD18_09385) sxy/tfoX 1968849..1969454 (+) 606 WP_001202375.1 TfoX/Sxy family DNA transformation protein Regulator
  ATD18_RS09825 (ATD18_09390) yccS 1969441..1971594 (-) 2154 WP_000950876.1 YccS family putative transporter -
  ATD18_RS09830 (ATD18_09395) - 1971613..1972059 (-) 447 WP_023993507.1 YccF domain-containing protein -
  ATD18_RS09835 (ATD18_09400) helD 1972183..1974237 (+) 2055 WP_023993506.1 DNA helicase IV -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23174.94 Da        Isoelectric Point: 8.7403

>NTDB_id=188062 ATD18_RS09820 WP_001202375.1 1968849..1969454(+) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Infantis strain FSIS1502169]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=188062 ATD18_RS09820 WP_001202375.1 1968849..1969454(+) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Infantis strain FSIS1502169]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTTTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTACTGTGTGAAGCATCCTCCCGCCTGGCTCATGTTTATGAAATGTGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTGCGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGACTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACGGTGAAAGTTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5I0N148

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

75.879

99.005

0.751

Multiple sequence alignment