Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   FORC40_RS10480 Genome accession   NZ_CP016398
Coordinates   2046359..2047075 (+) Length   238 a.a.
NCBI ID   WP_000688492.1    Uniprot ID   A0A7U7IEW1
Organism   Staphylococcus aureus strain FORC_040     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2041359..2052075
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC40_RS10445 (FORC40_1856) - 2041575..2042201 (+) 627 WP_000522384.1 nitroreductase family protein -
  FORC40_RS10455 (FORC40_1857) - 2042562..2043347 (+) 786 WP_000867942.1 carbon-nitrogen family hydrolase -
  FORC40_RS14565 hld 2043947..2044027 (-) 81 WP_000046022.1 delta-hemolysin -
  FORC40_RS10465 (FORC40_1859) agrB 2044317..2044886 (+) 570 WP_001105707.1 accessory gene regulator AgrB -
  FORC40_RS10470 (FORC40_1860) agrD 2044883..2045023 (+) 141 WP_001093929.1 cyclic lactone autoinducer peptide AgrD -
  FORC40_RS10475 agrC 2045048..2046340 (+) 1293 WP_001789596.1 quorum-sensing sensor histidine kinase AgrC -
  FORC40_RS10480 (FORC40_1862) agrA 2046359..2047075 (+) 717 WP_000688492.1 quorum-sensing response regulator AgrA Regulator
  FORC40_RS10485 - 2047147..2047256 (+) 110 Protein_1953 hypothetical protein -
  FORC40_RS10490 (FORC40_1863) - 2047444..2048403 (-) 960 WP_001253305.1 carbohydrate kinase family protein -
  FORC40_RS10495 (FORC40_1864) - 2048400..2049884 (-) 1485 WP_000141430.1 sucrose-6-phosphate hydrolase -
  FORC40_RS10500 (FORC40_1865) - 2050033..2050983 (-) 951 WP_000790325.1 LacI family DNA-binding transcriptional regulator -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27905.90 Da        Isoelectric Point: 6.0927

>NTDB_id=188021 FORC40_RS10480 WP_000688492.1 2046359..2047075(+) (agrA) [Staphylococcus aureus strain FORC_040]
MKIFICEDDPKQRENMVTIIKNYIMIEEKPMEIALATDNPYEVLEQAKNMNDIGCYFLDIQLSTDINGIKLGSEIRKHDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPAELRTRIIDCLETAHTRLQLLSKDNSVETIELKRGSNSVYVQYDDIM
FFESSTKSHRLIAHLDNRQIEFYGNLKELSQLDDRFFRCHNSFVVNRHNIESIDSKERIVYFKNKEHCYASVRNVKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=188021 FORC40_RS10480 WP_000688492.1 2046359..2047075(+) (agrA) [Staphylococcus aureus strain FORC_040]
ATGAAAATTTTCATTTGCGAAGACGATCCAAAACAAAGAGAAAACATGGTTACCATTATTAAAAATTATATAATGATAGA
AGAAAAGCCTATGGAAATTGCCCTCGCAACTGATAATCCTTATGAGGTGCTTGAGCAAGCTAAAAATATGAATGACATAG
GCTGTTACTTTTTAGATATTCAACTTTCAACTGATATTAATGGTATCAAATTAGGCAGTGAAATTCGTAAGCATGACCCA
GTTGGTAACATTATTTTCGTTACGAGTCACAGCGAACTTACCTATTTAACATTTGTCTACAAAGTTGCAGCGATGGATTT
TATTTTTAAAGATGATCCAGCAGAATTAAGAACTCGAATTATAGATTGTTTAGAAACTGCACATACACGCTTACAATTGT
TGTCTAAAGATAATAGCGTTGAAACGATTGAATTAAAACGTGGCAGTAATTCAGTGTATGTTCAATATGATGATATTATG
TTTTTTGAATCATCAACAAAATCTCACAGACTCATTGCCCATTTAGATAACCGTCAAATTGAATTTTATGGTAATTTAAA
AGAACTGAGTCAATTAGATGATCGTTTCTTTAGATGTCATAATAGCTTTGTCGTCAATCGCCATAATATTGAATCTATAG
ATTCGAAAGAGCGAATTGTCTATTTTAAAAATAAAGAACACTGCTATGCATCGGTGAGAAACGTTAAAAAAATATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(3-120)

LytTr DNA-binding domain (LytTR)

(151-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U7IEW1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

100

100

1

Multiple sequence alignment