Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   BBD27_RS08580 Genome accession   NZ_CP016394
Coordinates   1629797..1630606 (+) Length   269 a.a.
NCBI ID   WP_024704147.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain ND07     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1624797..1635606
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BBD27_RS08555 (BBD27_1699) - 1624893..1625591 (-) 699 WP_011681209.1 amino acid ABC transporter permease -
  BBD27_RS08560 (BBD27_1700) - 1625609..1626442 (-) 834 WP_011681208.1 transporter substrate-binding domain-containing protein -
  BBD27_RS08565 (BBD27_1701) - 1626454..1627221 (-) 768 WP_011681207.1 amino acid ABC transporter ATP-binding protein -
  BBD27_RS08570 (BBD27_1702) vicR 1627748..1628455 (+) 708 WP_011681206.1 response regulator YycF Regulator
  BBD27_RS08575 (BBD27_1703) vicK 1628448..1629788 (+) 1341 WP_011681205.1 cell wall metabolism sensor histidine kinase VicK Regulator
  BBD27_RS08580 (BBD27_1704) vicX 1629797..1630606 (+) 810 WP_024704147.1 MBL fold metallo-hydrolase Regulator
  BBD27_RS08585 (BBD27_1705) - 1630666..1631027 (+) 362 Protein_1625 YbaN family protein -
  BBD27_RS08590 (BBD27_1706) - 1631079..1632293 (-) 1215 WP_002953123.1 aminoacyltransferase -
  BBD27_RS08595 (BBD27_1707) yidA 1632295..1633104 (-) 810 WP_011226081.1 sugar-phosphatase -
  BBD27_RS10490 - 1633312..1634204 (+) 893 Protein_1628 GNAT family N-acetyltransferase -
  BBD27_RS08605 (BBD27_1711) - 1634296..1634682 (+) 387 WP_002953113.1 DUF1934 domain-containing protein -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 29943.90 Da        Isoelectric Point: 5.5779

>NTDB_id=187868 BBD27_RS08580 WP_024704147.1 1629797..1630606(+) (vicX) [Streptococcus thermophilus strain ND07]
MSELGFKYSILASGSTGNSFYLETPEKKILVDAGLSGKKITSLLAEIDRDPSDLDAILVTHEHKDHIHGVGVLARKYGMD
IYANEKTWQIMDSKNMLGKVDNSQKHIFSRGKLLTFGDIDIESFGVSHDAIDPQFYRFMKDGKSFVMLTDTGYVSDRMAG
LIENADGYLIESNHDIEILRAGSYPWSTKQRILSDQGHLCNEDGADAMIRTIGNKTKKIYLGHLSKENNIKELAYMTMEN
QLARADFGVGTDFKIFGTSPDTATPLTDI

Nucleotide


Download         Length: 810 bp        

>NTDB_id=187868 BBD27_RS08580 WP_024704147.1 1629797..1630606(+) (vicX) [Streptococcus thermophilus strain ND07]
ATCTCAGAATTAGGGTTTAAATATAGTATTTTGGCTTCAGGGTCAACCGGGAATTCCTTTTATTTGGAAACTCCAGAAAA
GAAGATTCTAGTGGATGCTGGTTTATCAGGAAAAAAAATTACAAGTTTGCTAGCGGAGATTGACCGTGATCCAAGTGATC
TTGATGCTATCTTAGTAACACATGAACACAAGGACCATATCCATGGTGTAGGTGTTTTAGCTCGTAAATACGGCATGGAT
ATATACGCCAATGAGAAAACCTGGCAAATTATGGATAGTAAGAATATGCTAGGTAAGGTTGATAATAGTCAGAAACATAT
TTTTTCTCGCGGTAAGCTTCTAACCTTTGGTGATATCGACATTGAATCTTTCGGAGTTAGTCATGATGCCATTGATCCAC
AATTTTACCGCTTTATGAAAGACGGAAAGAGCTTTGTCATGTTGACGGATACAGGCTATGTTTCAGACCGTATGGCTGGT
CTTATTGAAAATGCTGATGGCTATCTGATTGAATCTAATCATGATATTGAAATCTTGAGAGCAGGTTCTTATCCTTGGTC
AACCAAGCAACGTATCCTCTCTGATCAGGGTCACTTGTGTAATGAGGATGGAGCCGATGCTATGATTCGTACCATCGGTA
ATAAAACTAAAAAGATTTATCTGGGTCACCTTTCTAAAGAAAATAATATCAAGGAATTGGCCTACATGACGATGGAAAAT
CAGTTGGCTCGCGCTGACTTTGGTGTTGGAACTGACTTTAAGATTTTTGGTACCTCACCAGATACGGCGACCCCACTAAC
AGATATTTAG

Domains

Predicted by InterproScan.

Beta-lactamase superfamily domain (Lactamase_B_2)

(28-213)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

78.067

100

0.781

Multiple sequence alignment