Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   BBD27_RS07200 Genome accession   NZ_CP016394
Coordinates   1354173..1355099 (+) Length   308 a.a.
NCBI ID   WP_002946409.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain ND07     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1349173..1360099
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BBD27_RS07190 (BBD27_1418) amiA 1350651..1352618 (+) 1968 WP_024703940.1 peptide ABC transporter substrate-binding protein Regulator
  BBD27_RS07195 (BBD27_1419) amiC 1352680..1354173 (+) 1494 WP_011681416.1 ABC transporter permease Regulator
  BBD27_RS07200 (BBD27_1420) amiD 1354173..1355099 (+) 927 WP_002946409.1 oligopeptide ABC transporter permease OppC Regulator
  BBD27_RS07205 (BBD27_1421) amiE 1355109..1356194 (+) 1086 WP_011226304.1 ABC transporter ATP-binding protein Regulator
  BBD27_RS07210 (BBD27_1422) amiF 1356187..1357116 (+) 930 WP_002951426.1 ATP-binding cassette domain-containing protein Regulator
  BBD27_RS07215 (BBD27_1423) - 1357166..1357951 (-) 786 WP_002951425.1 hypothetical protein -
  BBD27_RS07220 (BBD27_1424) - 1357963..1358661 (-) 699 WP_023909821.1 ABC transporter ATP-binding protein -
  BBD27_RS07225 (BBD27_1425) - 1358666..1359043 (-) 378 WP_011681413.1 GntR family transcriptional regulator -
  BBD27_RS07230 (BBD27_1426) - 1359228..1360022 (+) 795 WP_011681412.1 HAD-IIB family hydrolase -

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34694.85 Da        Isoelectric Point: 9.7054

>NTDB_id=187859 BBD27_RS07200 WP_002946409.1 1354173..1355099(+) (amiD) [Streptococcus thermophilus strain ND07]
MASIDKSKFQFVKRDDFASETIDAPSYSYWKSVMRQFFKKKSTVVMLGILITIILMSFIYPMFSKFDFNDVSKVNDFSLR
YVHPNAQYWFGTDGNGKSLFDSVWFGARNSILIAVIATFLNVIIGLLVGAVWGISKTFDMIMMEIYNIISNIPSLLVVIV
LTYSLGAGFWNMIFAMTVTGWIGIAYTIRIQIMRYRDLEYNLASRNLGTPTAKIVIKNIMPQLVSVIVTMASQLLPGFIS
YEAFLSYFGLGLPVTTPSLGRLISDYAQNVTVNAYLFWIPLTTLILVSLALFIVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=187859 BBD27_RS07200 WP_002946409.1 1354173..1355099(+) (amiD) [Streptococcus thermophilus strain ND07]
ATGGCTTCAATTGATAAAAGTAAGTTCCAATTTGTAAAGCGCGATGATTTTGCCTCTGAAACAATTGATGCACCGTCTTA
CTCATACTGGAAATCAGTGATGCGTCAATTTTTTAAAAAGAAATCAACAGTTGTAATGTTGGGAATCTTGATTACTATTA
TTTTAATGAGTTTCATCTACCCAATGTTTTCTAAATTTGACTTCAATGATGTCTCAAAAGTAAATGATTTCAGTTTGCGT
TATGTACATCCAAACGCTCAATACTGGTTCGGTACTGACGGTAATGGTAAGTCTCTATTTGACAGTGTTTGGTTTGGGGC
TCGTAATTCTATCCTTATCGCTGTTATCGCTACCTTCCTGAATGTTATAATTGGTTTGCTTGTAGGTGCTGTTTGGGGGA
TTTCTAAGACCTTCGATATGATTATGATGGAAATCTACAACATCATCTCAAATATTCCCTCTCTCCTTGTGGTTATCGTC
TTGACTTACTCATTAGGTGCTGGTTTCTGGAATATGATTTTTGCCATGACCGTAACAGGTTGGATCGGTATTGCCTATAC
AATCCGTATTCAAATCATGCGTTATCGTGATTTGGAGTATAACTTGGCTTCTCGCAATTTGGGAACACCAACGGCTAAGA
TTGTGATTAAAAATATCATGCCACAACTTGTGTCAGTTATTGTAACCATGGCTAGTCAACTTTTGCCAGGATTTATCTCT
TATGAGGCCTTCCTTTCATACTTTGGTTTGGGTCTTCCTGTTACTACGCCTAGTCTTGGTCGTTTGATTTCAGACTATGC
ACAGAACGTTACAGTCAATGCCTATCTCTTCTGGATTCCATTGACTACCTTGATTCTTGTTTCTCTTGCCCTCTTTATTG
TTGGTCAAAACTTAGCGGATGCTAGTGACCCACGTACGCATAGATAG

Domains

Predicted by InterProScan.

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-71)

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus thermophilus LMG 18311

100

100

1
  amiD Streptococcus thermophilus LMD-9

100

100

1
  amiD Streptococcus salivarius strain HSISS4

96.429

100

0.964

Multiple sequence alignment