Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   BBD27_RS02170 Genome accession   NZ_CP016394
Coordinates   420014..420457 (-) Length   147 a.a.
NCBI ID   WP_002945408.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain ND07     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 415014..425457
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BBD27_RS02155 (BBD27_0438) - 416015..416272 (-) 258 WP_224107491.1 hypothetical protein -
  BBD27_RS02160 (BBD27_0439) rcrQ 416428..418206 (-) 1779 WP_024704205.1 ABC transporter ATP-binding protein Regulator
  BBD27_RS02165 (BBD27_0440) rcrP 418196..420010 (-) 1815 WP_024704204.1 ABC transporter ATP-binding protein Regulator
  BBD27_RS02170 (BBD27_0441) rcrR 420014..420457 (-) 444 WP_002945408.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  BBD27_RS02175 (BBD27_0442) - 420647..421057 (-) 411 WP_011680804.1 peptide deformylase -
  BBD27_RS02180 (BBD27_0443) gdhA 421315..422667 (-) 1353 WP_011680803.1 NADP-specific glutamate dehydrogenase -
  BBD27_RS02185 (BBD27_0444) - 423011..424117 (+) 1107 WP_024009756.1 AAA family ATPase -
  BBD27_RS02190 (BBD27_0445) - 424181..424933 (+) 753 WP_024704202.1 NUDIX domain-containing protein -

Sequence

Protein


Download         Length: 147 a.a.        Molecular weight: 17031.41 Da        Isoelectric Point: 9.5790

>NTDB_id=187823 BBD27_RS02170 WP_002945408.1 420014..420457(-) (rcrR) [Streptococcus thermophilus strain ND07]
MHGKDPFSDFREFINTMESRVQELGKAYGVEHLAGPQGFAVRYLFENQDKEIFIKDIEKKLSISKSVASNLVKRMEKNGF
VELVTSDKDKRYKYVHLTDLGKKKAQDVGHFREAIHGQLLDGISKEDAETAFRVFHQIRKNLEKNKE

Nucleotide


Download         Length: 444 bp        

>NTDB_id=187823 BBD27_RS02170 WP_002945408.1 420014..420457(-) (rcrR) [Streptococcus thermophilus strain ND07]
ATGCATGGAAAAGATCCTTTTAGTGACTTCAGAGAATTCATCAATACTATGGAGTCTCGCGTGCAAGAGTTAGGTAAAGC
GTATGGCGTTGAGCATTTAGCTGGTCCACAAGGGTTTGCCGTTAGGTACTTGTTTGAGAACCAAGATAAAGAAATATTTA
TCAAAGATATTGAGAAAAAACTATCTATTTCCAAGTCAGTGGCTAGTAATTTGGTCAAACGTATGGAGAAAAATGGTTTT
GTTGAATTGGTGACATCTGACAAGGACAAACGCTACAAGTATGTTCATCTGACAGACTTAGGCAAAAAGAAGGCTCAAGA
CGTCGGACATTTCCGAGAGGCTATCCATGGACAGTTATTAGATGGTATTTCGAAAGAAGATGCTGAAACAGCATTTCGAG
TCTTTCACCAAATTCGTAAGAATTTAGAGAAAAATAAGGAGTAA

Domains

Predicted by InterproScan.

MarR family (MarR_2)

(42-91)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

56.028

95.918

0.537

Multiple sequence alignment