Detailed information NTG0187711

Bioinformatically predicted

Overview

• Name: luxP
• Type: Regulator
• Locus tag: vm_RS16980
• Genome accession: NZ_CP016384
• Coordinates: 393520..394617 (-)
• Length: 365 a.a.
• NCBI ID: WP_000827826.1
• Uniprot ID: D2Y9K3
• Organism: Vibrio mimicus strain SCCF01
• Function: autoinducer sensor (predicted from homology) Competence regulation

Genomic Context

Location: 388520..399617

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
vm_RS16960 (VM_16965)	-	388982..389380 (+)	399	WP_005525727.1	YgiW/YdeI family stress tolerance OB fold protein	-
vm_RS16965 (VM_16970)	-	389593..390111 (+)	519	WP_000932976.1	hypothetical protein	-
vm_RS16970 (VM_16975)	-	390270..390935 (+)	666	WP_070382845.1	PilZ domain-containing protein	-
vm_RS16975 (VM_16980)	luxQ	390927..393500 (-)	2574	WP_070382846.1	quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ	Regulator
vm_RS16980 (VM_16985)	luxP	393520..394617 (-)	1098	WP_000827826.1	autoinducer 2-binding periplasmic protein LuxP	Regulator
vm_RS16985 (VM_16990)	traF	394816..395976 (-)	1161	WP_070382847.1	conjugal transfer protein TraF	-
vm_RS16990 (VM_16995)	-	396077..396376 (-)	300	WP_000387992.1	GIY-YIG nuclease family protein	-
vm_RS16995 (VM_17000)	-	396376..397026 (-)	651	WP_005525716.1	YceH family protein	-
vm_RS17000 (VM_17005)	-	397069..397266 (-)	198	WP_005525715.1	hypothetical protein	-
vm_RS17005 (VM_17010)	-	397455..397775 (+)	321	WP_001089530.1	DUF496 family protein	-
vm_RS17010 (VM_17015)	-	398187..398438 (+)	252	WP_005520676.1	YgjV family protein	-

Sequence

Protein

• Length: 365 a.a.
• Molecular weight: 41775.52 Da
• Isoelectric Point: 6.4002

>NTDB_id=187711 vm_RS16980 WP_000827826.1 393520..394617(-) (luxP) [Vibrio mimicus strain SCCF01]
MKRNILLSLLLTATLFTSATYADSLKGYWHYDEFLTEFPEQQNLTDQLAKTVRDKPIPLSVKQRQPVVISVVYPGQQISD
YWVRNIKAFEKRMDELGIRYQINQVFTRPNLDTRQQSVSLMEALKNKSDYLIFTLDTTRHRKFIEHVLHSSETKLILQNI
TTPVKDWQGRQPMMYIGFDHELGALQLAQQYQKIAPKQKPYSVLYFSEGYISEARGDTFIQQMNEEHRFQLASSYYTKAT
EQSGYEATLNIVKNNPEIGFIYACATDIALGAAQALKELGRQDILLNGWGGGSAELDALAKGDLNLTIMRMNDDTGVAMA
EAIKWDLEEKVVPLVYSGDFEIVTQQDSSKHVEALKARAFRYSDR

Nucleotide

• Length: 1098 bp

>NTDB_id=187711 vm_RS16980 WP_000827826.1 393520..394617(-) (luxP) [Vibrio mimicus strain SCCF01]
ATGAAAAGAAATATACTGCTGTCGCTGCTTCTGACTGCAACGCTCTTCACTTCAGCAACCTATGCTGATTCTTTGAAAGG
GTATTGGCATTATGATGAGTTCCTGACGGAATTCCCCGAGCAGCAGAATCTGACCGATCAGCTAGCAAAAACCGTTCGCG
ATAAGCCTATACCACTCAGTGTTAAACAGCGGCAACCCGTCGTGATTTCGGTCGTGTATCCCGGACAACAGATCTCCGAT
TATTGGGTTCGTAATATCAAGGCTTTCGAGAAACGGATGGATGAACTCGGTATCCGTTATCAAATTAATCAAGTTTTTAC
TCGTCCTAATCTCGATACTCGTCAGCAAAGTGTCTCCTTGATGGAAGCACTCAAAAACAAGAGCGATTATCTGATTTTCA
CTTTAGATACCACGCGTCACCGTAAGTTTATTGAGCATGTGTTGCACTCTTCTGAAACCAAGCTGATTTTGCAAAACATC
ACGACCCCTGTAAAAGATTGGCAAGGCCGTCAACCTATGATGTACATCGGCTTTGATCATGAGTTAGGGGCTTTGCAGCT
CGCACAGCAGTACCAAAAAATTGCCCCTAAACAAAAACCATACTCCGTTCTCTATTTCTCTGAAGGCTATATCAGTGAAG
CGCGGGGTGATACGTTCATTCAGCAAATGAATGAAGAACACCGTTTTCAATTGGCTTCTTCGTATTACACTAAAGCGACT
GAACAAAGTGGTTACGAGGCGACATTGAACATAGTCAAAAATAATCCGGAGATTGGTTTTATTTATGCTTGTGCAACGGA
TATTGCTTTGGGAGCGGCTCAGGCATTAAAAGAGCTTGGCCGACAAGACATTTTACTGAATGGCTGGGGTGGCGGTTCAG
CCGAATTGGATGCTTTGGCCAAAGGCGATCTGAATCTCACCATCATGCGAATGAACGATGATACAGGCGTGGCAATGGCG
GAAGCCATCAAGTGGGATTTGGAAGAGAAAGTCGTACCACTCGTCTATTCTGGTGATTTTGAAATCGTGACCCAACAAGA
TTCATCAAAACATGTTGAAGCACTGAAAGCCCGCGCTTTCCGTTATTCGGATCGTTAA

Domains

Predicted by InterproScan.

• Periplasmic binding protein domain (Peripla_BP_4) (69-321)

3D structure

• AlphaFold DB: D2Y9K3

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
luxP	Vibrio cholerae strain A1552	83.836	100	0.838