Detailed information NTG0187698

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: vm_RS12520
• Genome accession: NZ_CP016383
• Coordinates: 2681861..2682871 (-)
• Length: 336 a.a.
• NCBI ID: WP_000116730.1
• Uniprot ID: A0A1D8SDR3
• Organism: Vibrio mimicus strain SCCF01
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2676861..2687871

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
vm_RS12510 (VM_12515)	cysM	2677981..2678868 (+)	888	WP_005526810.1	cysteine synthase CysM	-
vm_RS12515 (VM_12520)	mutS	2679197..2681785 (+)	2589	WP_070382285.1	DNA mismatch repair protein MutS	-
vm_RS12520 (VM_12525)	rpoS	2681861..2682871 (-)	1011	WP_000116730.1	RNA polymerase sigma factor RpoS	Regulator
vm_RS12525 (VM_12530)	nlpD	2682945..2683880 (-)	936	WP_070382286.1	murein hydrolase activator NlpD	-
vm_RS12530 (VM_12535)	-	2683880..2684506 (-)	627	WP_000002984.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
vm_RS12535 (VM_12540)	surE	2684499..2685251 (-)	753	WP_070382287.1	5'/3'-nucleotidase SurE	-
vm_RS12540 (VM_12545)	truD	2685253..2686338 (-)	1086	WP_070382288.1	tRNA pseudouridine(13) synthase TruD	-
vm_RS12545 (VM_12550)	ispF	2686368..2686844 (-)	477	WP_070382289.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
vm_RS12550 (VM_12555)	ispD	2686841..2687539 (-)	699	WP_070382290.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
vm_RS12555 (VM_12560)	ftsB	2687536..2687820 (-)	285	WP_001263188.1	cell division protein FtsB	-

Sequence

Protein

• Length: 336 a.a.
• Molecular weight: 38584.40 Da
• Isoelectric Point: 4.3159

>NTDB_id=187698 vm_RS12520 WP_000116730.1 2681861..2682871(-) (rpoS) [Vibrio mimicus strain SCCF01]
MSVSNTVTKVEEFDFEDEALEVLEADDELSSDEELVTAEGASDEVREEFDASAKSLDATQMYLSEIGFSPLLTAEEEVLY
ARRALRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALM
NQTRTIRLPIHVVKELNIYLRTARELSQRLDHEPTPEEIALELDKPVDDVTKMLRLNERISSVDTPIGGDGDKALLDILP
DSNNADPEFSTQDDDIRESLLNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILVK
QGLNMEALFNVEYDVN

Nucleotide

• Length: 1011 bp

>NTDB_id=187698 vm_RS12520 WP_000116730.1 2681861..2682871(-) (rpoS) [Vibrio mimicus strain SCCF01]
ATGAGTGTCAGCAATACCGTAACCAAAGTAGAAGAGTTTGATTTTGAAGATGAAGCACTGGAAGTGCTAGAAGCGGATGA
TGAGCTCTCGAGTGATGAAGAATTAGTGACCGCTGAAGGGGCAAGTGATGAAGTTCGCGAAGAGTTTGATGCTTCTGCGA
AAAGTCTCGATGCCACGCAAATGTATCTCAGTGAAATTGGTTTCTCACCTCTACTGACTGCCGAAGAAGAAGTGCTTTAT
GCTCGTCGTGCTTTACGTGGCGATGAAGCAGCACGTAAACGCATGATTGAAAGTAACTTGCGTTTAGTCGTTAAAATTTC
ACGTCGCTACAGCAATCGTGGATTAGCACTGCTCGATCTGATTGAAGAAGGTAACCTAGGTCTCATTCGTGCGGTTGAAA
AATTCGACCCAGAACGTGGTTTCCGCTTTTCAACTTACGCGACATGGTGGATCCGTCAAACCATCGAACGTGCGCTGATG
AACCAAACTCGCACCATTCGTCTACCGATTCATGTTGTCAAAGAATTGAACATTTACCTGCGTACTGCTCGTGAATTGTC
ACAACGTCTTGACCACGAACCTACGCCAGAAGAAATCGCGCTCGAGCTCGATAAACCGGTTGATGATGTAACGAAGATGC
TGCGTCTCAACGAACGTATCAGCTCTGTTGATACACCGATTGGCGGCGATGGTGATAAAGCACTGCTGGATATCTTGCCG
GACTCCAATAATGCGGATCCTGAGTTTTCGACTCAAGATGATGATATTCGTGAATCTCTGCTCAACTGGCTTGATGAACT
CAATCCAAAACAGAAAGAAGTTCTTGCTCGTCGTTTTGGTTTGTTGGGTTATGAGCCCTCCACATTGGAAGAAGTAGGAC
GTGAGATCAATCTGACTCGTGAGCGTGTACGCCAAATTCAGGTAGAAGGGTTACGCCGTCTGCGTGAGATCTTGGTGAAA
CAAGGTTTGAATATGGAAGCTCTGTTTAACGTCGAATACGACGTCAACTAA

Domains

Predicted by InterproScan.

• Sigma-70 region 3 (Sigma70_r3) (175-248)

• Sigma-70, region 4 (Sigma70_r4) (263-316)

• Sigma-70 region 2 (Sigma70_r2) (95-164)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (57-90)

3D structure

• AlphaFold DB: A0A1D8SDR3

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	97.305	99.405	0.967