Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   vm_RS08690 Genome accession   NZ_CP016383
Coordinates   1871812..1873236 (+) Length   474 a.a.
NCBI ID   WP_070381926.1    Uniprot ID   -
Organism   Vibrio mimicus strain SCCF01     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1866812..1878236
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  vm_RS08670 (VM_08675) - 1867274..1868059 (-) 786 WP_000718977.1 adenosylcobinamide-GDP ribazoletransferase -
  vm_RS08675 (VM_08680) cobT 1868059..1869084 (-) 1026 WP_070381924.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -
  vm_RS08680 (VM_08685) msrB 1869527..1869976 (-) 450 WP_070381925.1 peptide-methionine (R)-S-oxide reductase MsrB -
  vm_RS08685 (VM_08690) - 1870291..1871664 (+) 1374 WP_061052457.1 L-cystine transporter -
  vm_RS08690 (VM_08695) sbcB 1871812..1873236 (+) 1425 WP_070381926.1 exodeoxyribonuclease I Machinery gene
  vm_RS08695 (VM_08700) - 1873265..1873639 (+) 375 WP_032468633.1 CidA/LrgA family protein -
  vm_RS08700 (VM_08705) - 1873630..1874304 (+) 675 WP_000266248.1 LrgB family protein -
  vm_RS08705 (VM_08710) cdd 1874473..1875360 (+) 888 WP_001246048.1 cytidine deaminase -
  vm_RS08710 (VM_08715) - 1875508..1876383 (+) 876 WP_070381927.1 AEC family transporter -
  vm_RS08715 (VM_08720) purT 1876538..1877713 (+) 1176 WP_000468089.1 phosphoribosylglycinamide formyltransferase 2 -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 54762.07 Da        Isoelectric Point: 5.7743

>NTDB_id=187687 vm_RS08690 WP_070381926.1 1871812..1873236(+) (sbcB) [Vibrio mimicus strain SCCF01]
MQQEHQPTFFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPEAALITGITPQKANSLGLPEP
EFIARIHAELSTPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQHGNSRWDLLDVIRACHALRPEGIEWPENDEGFT
SFKLEHLSVANGIEHSNAHDAMADVIATIELAKKIKAAQPKLFDYFFNMRHKRKLTELIDIVNQTPLMHVSGMLGRERQY
TSWIVPIAWHPTNQNAVIVVDLGKDPQPLFDLDAEALQARLYTRYEDLAPDELPVPVKLVHLNKCPILAPAKTLTAENAE
KIGIDREQCLAHLNVIRQHPEIREKLVTVFSQEREFAKENNVDSQLYEGFFSPADRAAMEIIRTTSPDNLGSLEIQVADK
RIEPLLFRYRARHYPHTLTDAEQRRWAAHCRDYFERNLESYMLNLENLVHEHQTDEKKMAILKSVYHYVEKLAH

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=187687 vm_RS08690 WP_070381926.1 1871812..1873236(+) (sbcB) [Vibrio mimicus strain SCCF01]
ATGCAGCAAGAACACCAGCCAACATTTTTCTTCTTTGACTACGAGACTTGGGGAGTGAATCCCGCGAAGGATCGCCCTAG
TCAGTTTGCGGGTGTTCGTACCGATATGGATTTCAACATCATTGGTGAGCCGCTGGTGATTTACTGCCAATTACCAAATG
ATTATTTACCCGCTCCTGAAGCGGCGCTGATCACCGGAATTACTCCACAGAAAGCGAATAGTTTAGGCTTACCAGAGCCA
GAATTTATCGCCCGCATTCATGCTGAACTCTCCACGCCAAACACCACCAGCTTAGGCTACAACAGCATTCGTTTTGACGA
TGAAGTGACACGCTACACCTGCTATCGCAACTTTATCGACCCGTATGCATGGAGCTGGCAACACGGCAATTCTCGTTGGG
ATCTGCTGGATGTGATTCGAGCTTGCCATGCTTTGCGCCCTGAAGGCATCGAATGGCCAGAGAATGATGAAGGCTTTACT
AGCTTTAAGTTAGAACACCTTTCTGTCGCCAACGGCATTGAACACAGTAACGCACACGATGCGATGGCTGACGTGATTGC
TACCATTGAACTGGCGAAAAAAATCAAAGCAGCGCAACCGAAACTGTTTGATTACTTCTTCAACATGCGCCACAAACGCA
AGCTGACCGAGCTGATTGATATCGTTAACCAAACACCGCTGATGCATGTTTCCGGTATGCTTGGCCGCGAACGTCAGTAC
ACCAGTTGGATTGTGCCGATTGCTTGGCATCCTACCAACCAAAATGCGGTCATTGTGGTGGATTTGGGTAAAGACCCTCA
GCCTCTGTTTGATCTTGATGCAGAAGCGTTGCAAGCGCGTCTCTATACTCGTTATGAAGATTTAGCCCCCGATGAACTGC
CCGTTCCGGTGAAGTTAGTGCATCTCAACAAATGCCCTATTCTTGCTCCCGCCAAGACTCTGACCGCAGAGAATGCTGAA
AAGATTGGTATTGATCGTGAACAGTGTCTTGCCCATTTGAATGTGATCCGTCAGCATCCAGAAATTCGTGAAAAGCTGGT
GACGGTATTCAGTCAAGAGCGCGAGTTTGCCAAGGAAAACAATGTGGATAGCCAATTGTATGAAGGGTTCTTCTCGCCTG
CCGATCGTGCGGCGATGGAGATCATTCGCACCACATCACCGGATAATCTTGGCAGCCTAGAGATTCAAGTGGCGGATAAA
CGTATCGAACCTCTGTTGTTCCGTTACCGTGCTCGCCATTACCCACATACCTTAACCGATGCCGAGCAGCGCCGCTGGGC
AGCGCATTGTCGTGACTATTTTGAACGTAACCTTGAAAGCTATATGCTGAATTTGGAAAACTTAGTTCATGAACATCAGA
CTGACGAAAAGAAAATGGCGATTTTAAAATCCGTTTACCATTACGTTGAAAAGCTCGCTCACTAA

Domains

Predicted by InterproScan.

Exonuclease C-terminal (Exonuc_X-T_C)

(210-470)

Exonuclease (RNase_T)

(11-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

94.503

99.789

0.943

Multiple sequence alignment