Detailed information
Bioinformatically predicted
Overview
| Name | pilP | Type | Machinery gene |
| Locus tag | vm_RS01780 | Genome accession | NZ_CP016383 |
| Coordinates | 344786..345304 (+) | Length | 172 a.a. |
| NCBI ID | WP_005524360.1 | Uniprot ID | - |
| Organism | Vibrio mimicus strain SCCF01 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 339786..350304
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| vm_RS01760 (VM_01760) | - | 340004..342481 (-) | 2478 | WP_000668749.1 | penicillin-binding protein 1A | - |
| vm_RS01765 (VM_01765) | pilM | 342623..343639 (+) | 1017 | WP_070381278.1 | type IV pilus assembly protein PilM | Machinery gene |
| vm_RS01770 (VM_01770) | pilN | 343629..344213 (+) | 585 | WP_000903041.1 | PilN domain-containing protein | Machinery gene |
| vm_RS01775 (VM_01775) | pilO | 344206..344796 (+) | 591 | WP_000135849.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| vm_RS01780 (VM_01780) | pilP | 344786..345304 (+) | 519 | WP_005524360.1 | pilus assembly protein PilP | Machinery gene |
| vm_RS01785 (VM_01785) | pilQ | 345330..347045 (+) | 1716 | WP_070381279.1 | type IV pilus secretin PilQ | Machinery gene |
| vm_RS01790 (VM_01790) | aroK | 347232..347756 (+) | 525 | WP_000818614.1 | shikimate kinase AroK | - |
| vm_RS01795 (VM_01795) | aroB | 347784..348869 (+) | 1086 | WP_070381280.1 | 3-dehydroquinate synthase | - |
Sequence
Protein
Download Length: 172 a.a. Molecular weight: 18998.91 Da Isoelectric Point: 9.8335
>NTDB_id=187673 vm_RS01780 WP_005524360.1 344786..345304(+) (pilP) [Vibrio mimicus strain SCCF01]
MKNNPAWLSLITLFLLVGCKANQEDLAGYVAQVEREARKEVTKLKPILEFEVTAYQQHSGREPFVLPKEALVQNQPVAKS
DCWQPSPRAKNGPLERYPLSQLRLKGVMSSGGSISALVQTPAGNVVKVKAGQYVGNNNGKITRVDDNYLLINETLPDGLG
CWNQRNVKLALK
MKNNPAWLSLITLFLLVGCKANQEDLAGYVAQVEREARKEVTKLKPILEFEVTAYQQHSGREPFVLPKEALVQNQPVAKS
DCWQPSPRAKNGPLERYPLSQLRLKGVMSSGGSISALVQTPAGNVVKVKAGQYVGNNNGKITRVDDNYLLINETLPDGLG
CWNQRNVKLALK
Nucleotide
Download Length: 519 bp
>NTDB_id=187673 vm_RS01780 WP_005524360.1 344786..345304(+) (pilP) [Vibrio mimicus strain SCCF01]
ATGAAAAATAACCCTGCATGGTTGTCTCTCATCACCTTGTTTCTGTTGGTGGGATGTAAAGCTAATCAAGAAGATCTGGC
CGGTTATGTCGCACAAGTAGAACGTGAGGCTCGCAAGGAAGTCACTAAACTCAAACCAATTTTGGAGTTTGAAGTGACGG
CCTATCAACAGCACTCAGGACGTGAGCCATTTGTGTTGCCTAAAGAGGCTTTGGTGCAAAACCAACCTGTTGCGAAATCA
GACTGCTGGCAGCCTTCTCCACGAGCTAAAAATGGCCCATTAGAGCGTTATCCATTAAGTCAATTGCGCCTGAAAGGGGT
AATGAGCAGTGGCGGATCCATCTCGGCGTTAGTGCAAACCCCCGCGGGTAATGTCGTCAAAGTTAAAGCAGGACAGTACG
TGGGTAACAATAACGGAAAAATTACACGAGTGGATGATAACTATTTATTAATTAATGAAACTTTGCCTGATGGCTTAGGG
TGTTGGAATCAGCGTAACGTCAAGCTGGCTTTAAAATAA
ATGAAAAATAACCCTGCATGGTTGTCTCTCATCACCTTGTTTCTGTTGGTGGGATGTAAAGCTAATCAAGAAGATCTGGC
CGGTTATGTCGCACAAGTAGAACGTGAGGCTCGCAAGGAAGTCACTAAACTCAAACCAATTTTGGAGTTTGAAGTGACGG
CCTATCAACAGCACTCAGGACGTGAGCCATTTGTGTTGCCTAAAGAGGCTTTGGTGCAAAACCAACCTGTTGCGAAATCA
GACTGCTGGCAGCCTTCTCCACGAGCTAAAAATGGCCCATTAGAGCGTTATCCATTAAGTCAATTGCGCCTGAAAGGGGT
AATGAGCAGTGGCGGATCCATCTCGGCGTTAGTGCAAACCCCCGCGGGTAATGTCGTCAAAGTTAAAGCAGGACAGTACG
TGGGTAACAATAACGGAAAAATTACACGAGTGGATGATAACTATTTATTAATTAATGAAACTTTGCCTGATGGCTTAGGG
TGTTGGAATCAGCGTAACGTCAAGCTGGCTTTAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilP | Vibrio cholerae strain A1552 |
87.791 |
100 |
0.878 |
| pilP | Vibrio campbellii strain DS40M4 |
56.213 |
98.256 |
0.552 |