Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   B6R96_RS23935 Genome accession   NZ_CP020555
Coordinates   5357363..5359096 (-) Length   577 a.a.
NCBI ID   WP_030384585.1    Uniprot ID   -
Organism   Streptomyces sp. Sge12     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5352363..5364096
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B6R96_RS23920 (B6R96_23920) - 5353497..5354717 (+) 1221 WP_237291502.1 RNA polymerase sigma factor -
  B6R96_RS23925 (B6R96_23925) - 5354798..5355313 (-) 516 WP_030384587.1 GNAT family N-acetyltransferase -
  B6R96_RS23930 (B6R96_23930) rcrQ 5355444..5357366 (-) 1923 WP_030384586.1 ABC transporter ATP-binding protein Regulator
  B6R96_RS23935 (B6R96_23935) rcrP 5357363..5359096 (-) 1734 WP_030384585.1 ABC transporter ATP-binding protein Regulator
  B6R96_RS23940 (B6R96_23940) - 5359243..5360694 (-) 1452 WP_053171528.1 FGGY family carbohydrate kinase -
  B6R96_RS23945 (B6R96_23945) - 5360802..5361104 (-) 303 WP_030384583.1 hypothetical protein -
  B6R96_RS23965 (B6R96_23965) - 5362410..5363660 (-) 1251 WP_081523596.1 acyltransferase -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62596.59 Da        Isoelectric Point: 5.2917

>NTDB_id=187625 B6R96_RS23935 WP_030384585.1 5357363..5359096(-) (rcrP) [Streptomyces sp. Sge12]
MLIRLLRTHLRPYRKPIAVLVLLQLLQTSASLYLPTLNADIIDNGVVNGDTGYILRFGALMLGVSLVQLVCNVGAVYYGA
RTAAAFGRDVRAAVFDRVQSFSARELGQFGAPSLITRTTNDVQQVQMLVLMTFTLMVSAPIMCVGGIAMALSLDVKLSGV
LLAVVPVLGISVGAIVFRTRPLFRQMQARLDTVNRVLREQITGNRVIRAFVRDDYEKDRFREANADLTGVSLAAGKLLAY
MFPTVIVVVNISSVAVIWFGAMRVDSGGMEIGQLTAFLAYLMQIVMAVMMATFMFMMVPRAEVCGERIQEVLDTESSVVP
PKDPVRELARRGRLELRGADFRYPGAEAPVLRGVDLVARPGETTAVIGSTGSGKSTLLGLVPRLFDATGGEVLVDGEDVR
ALDPELLAKTVGMVPQKPYLFSGTIASNLRYGRPDASDEELWQALEVAQAKEFVSALEGGLEAPVAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALSRETEEATVVIVAQRVSTIRDADRIIVLDEGQVVGEGRHHELMAGN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=187625 B6R96_RS23935 WP_030384585.1 5357363..5359096(-) (rcrP) [Streptomyces sp. Sge12]
GTGCTCATACGACTTCTGCGGACGCATCTGCGTCCGTACCGCAAACCCATCGCGGTGCTGGTCCTGCTGCAGCTGCTGCA
GACCAGTGCGAGCCTCTACCTGCCCACCCTCAACGCCGACATCATTGACAACGGTGTCGTCAACGGTGACACCGGCTACA
TCCTGCGCTTCGGCGCGCTGATGCTCGGCGTCTCCCTCGTCCAGCTCGTCTGCAACGTGGGAGCCGTCTACTACGGGGCC
CGTACCGCCGCCGCCTTCGGCCGGGACGTCCGCGCCGCCGTCTTCGACCGCGTGCAGAGCTTCTCGGCGCGGGAGCTCGG
CCAGTTCGGCGCGCCCTCGCTGATCACCCGTACGACGAACGACGTCCAGCAGGTCCAGATGCTGGTGCTGATGACCTTCA
CGCTGATGGTCTCGGCCCCCATCATGTGCGTCGGCGGCATCGCCATGGCGCTCTCGCTCGACGTGAAGCTGTCGGGCGTC
CTGCTCGCGGTGGTCCCCGTGCTCGGGATCTCGGTCGGCGCCATCGTCTTCAGGACGCGGCCGCTGTTCCGCCAGATGCA
GGCGCGCCTGGACACCGTGAACCGGGTCCTGCGCGAGCAGATCACCGGCAACCGGGTGATCCGCGCCTTCGTCCGCGACG
ACTACGAGAAGGACCGCTTCCGCGAGGCCAACGCCGACCTGACCGGCGTCTCGCTGGCCGCCGGCAAGCTGCTGGCGTAC
ATGTTCCCCACCGTCATCGTGGTCGTGAACATCTCCAGCGTCGCCGTGATCTGGTTCGGGGCGATGCGCGTCGACAGCGG
CGGCATGGAGATCGGCCAGCTGACGGCCTTCCTCGCCTACCTGATGCAGATCGTGATGGCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCCGAGGTCTGCGGCGAGCGCATCCAGGAGGTCCTGGACACCGAGTCCAGCGTGGTCCCG
CCCAAGGACCCGGTGCGCGAACTCGCCCGCCGCGGGCGTCTGGAGCTGCGCGGCGCCGACTTCCGCTACCCGGGCGCCGA
GGCGCCGGTGCTGCGCGGGGTGGACCTGGTGGCCCGACCCGGCGAAACCACGGCGGTCATCGGCTCCACCGGCAGCGGCA
AGTCCACACTGCTGGGCCTGGTCCCGCGGTTGTTCGACGCGACCGGCGGCGAGGTGCTCGTCGACGGCGAGGACGTCCGC
GCGCTCGATCCGGAGCTGCTGGCCAAGACGGTCGGCATGGTGCCGCAGAAGCCGTACCTGTTCTCCGGGACCATCGCCTC
CAACCTGCGCTACGGGCGCCCCGACGCGAGTGACGAGGAGCTCTGGCAGGCGCTGGAGGTGGCCCAGGCCAAGGAGTTCG
TCTCCGCGCTGGAGGGTGGCCTGGAGGCCCCCGTCGCCCAGGGCGGAACGAATGTCTCCGGCGGCCAGCGCCAGCGTCTG
GCCATCGCCCGCACGCTCGTGCAGCGCCCGGAGATCTACCTCTTCGACGACTCCTTCTCCGCCCTGGACTACGCGACGGA
CGCGGCGCTGCGCGCGGCGCTGTCCCGCGAGACCGAGGAGGCGACCGTGGTCATCGTGGCCCAGCGGGTCTCCACGATCC
GCGACGCCGACCGGATCATCGTCCTGGACGAGGGCCAGGTCGTGGGCGAGGGACGCCACCACGAGCTGATGGCCGGCAAC
GAGACCTACCGGGAGATCGTGCTCTCCCAGCTGACGGAGGCGGAGGCCGCATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(352-498)

ABC transporter transmembrane region (ABC_membrane)

(19-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

41.822

93.241

0.39

Multiple sequence alignment