Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   BBF96_RS15940 Genome accession   NZ_CP016379
Coordinates   3499932..3501293 (+) Length   453 a.a.
NCBI ID   WP_127018055.1    Uniprot ID   A0A3Q9HSC8
Organism   Anoxybacter fermentans strain DY22613     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3494932..3506293
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BBF96_RS15920 (BBF96_15680) - 3495080..3495547 (+) 468 WP_236777847.1 CtsR family transcriptional regulator -
  BBF96_RS15925 (BBF96_15685) - 3495582..3496109 (+) 528 WP_127018052.1 UvrB/UvrC motif-containing protein -
  BBF96_RS15930 (BBF96_15690) - 3496109..3497167 (+) 1059 WP_127018053.1 protein arginine kinase -
  BBF96_RS15935 (BBF96_15695) - 3497428..3499860 (+) 2433 WP_127018054.1 ATP-dependent Clp protease ATP-binding subunit -
  BBF96_RS15940 (BBF96_15700) radA 3499932..3501293 (+) 1362 WP_127018055.1 DNA repair protein RadA Machinery gene
  BBF96_RS15945 (BBF96_15705) disA 3501294..3502463 (+) 1170 WP_127018056.1 DNA integrity scanning diadenylate cyclase DisA -
  BBF96_RS15950 (BBF96_15710) - 3502509..3502919 (-) 411 WP_205665663.1 hypothetical protein -
  BBF96_RS15955 (BBF96_15715) - 3503110..3503601 (+) 492 WP_127018057.1 CarD family transcriptional regulator -
  BBF96_RS15960 (BBF96_15720) - 3503704..3504804 (+) 1101 WP_127018058.1 PIN/TRAM domain-containing protein -
  BBF96_RS15965 (BBF96_15725) ispD 3504819..3505517 (+) 699 WP_127018059.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  BBF96_RS15970 (BBF96_15730) ispF 3505508..3506008 (+) 501 WP_127018060.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 50037.96 Da        Isoelectric Point: 8.4382

>NTDB_id=187624 BBF96_RS15940 WP_127018055.1 3499932..3501293(+) (radA) [Anoxybacter fermentans strain DY22613]
MAKKKTRFICQKCGYEAIKWYGQCPDCKEWNTLVEEIVTSQQRKERPTLVNPPQSIRKLKTDRYQRLKTLLGELDRVLGG
GIVPGSLILIGGDPGIGKSTLLLQVADRIARDYGKVLYVTGEESGSQVRMRAERLKTMCEKLYVQSENNIFTIEEGINKI
NPIMVIVDSIQTIFNPDLSSAPGSISQVRETSSHLMRIAKERGIPIFVVGHVTKEGSLAGPRVLEHMVDTVLYFEGDRHH
SYRILRAVKNRFGSTNEIGIFEMQQTGLIEVPNPSEVFLSERPQGASGSVVIPSVEGSRPILIELQALVSSANFATPQRM
TAGVDRNRVALVLAVLEKKIGMYIQSQDVYINVVGGVRLSEPALDLGIAVACASSYREKPIDSKVAIVGEVGLAGEIRAV
QQIEARVKEAKKLGFTRVIMPWSNYKAMDFDPEMELVGVKDLNEALSLLLGGE

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=187624 BBF96_RS15940 WP_127018055.1 3499932..3501293(+) (radA) [Anoxybacter fermentans strain DY22613]
ATGGCGAAGAAAAAAACCCGGTTTATCTGTCAGAAATGTGGATATGAGGCAATAAAATGGTATGGCCAGTGCCCTGATTG
TAAAGAATGGAATACACTGGTAGAAGAAATTGTTACTTCTCAACAGAGAAAAGAACGACCAACATTGGTTAATCCGCCTC
AATCAATTAGAAAACTTAAAACTGACAGATATCAACGATTAAAAACATTATTAGGTGAGCTTGACCGGGTTTTGGGTGGA
GGTATTGTCCCCGGGTCTTTAATCCTGATAGGAGGGGATCCGGGGATTGGTAAATCTACTCTTCTTTTACAGGTAGCGGA
TCGGATTGCCCGGGATTACGGTAAGGTTTTATATGTAACAGGAGAAGAATCGGGTAGTCAAGTTCGCATGCGAGCTGAGA
GACTGAAGACAATGTGTGAGAAATTATATGTTCAATCTGAGAATAATATATTTACCATTGAAGAGGGAATAAATAAAATT
AATCCCATTATGGTGATTGTTGATTCTATACAAACGATATTTAATCCGGATTTGAGTTCAGCTCCCGGTAGTATAAGCCA
GGTGAGGGAGACTTCATCTCATTTAATGCGGATAGCTAAAGAAAGAGGTATCCCCATTTTTGTTGTGGGGCATGTGACTA
AGGAAGGAAGTTTAGCTGGCCCTAGAGTTTTAGAACATATGGTGGATACAGTACTTTATTTTGAAGGTGACCGCCATCAT
TCCTATCGGATTTTGCGGGCAGTCAAAAATCGTTTCGGCTCGACAAATGAGATAGGTATTTTTGAAATGCAGCAGACCGG
TCTTATAGAAGTACCCAATCCTTCAGAGGTATTTCTTTCCGAACGGCCCCAGGGAGCTTCTGGATCAGTAGTTATCCCCT
CAGTAGAAGGTAGTCGTCCCATTCTTATTGAATTACAGGCTTTAGTTAGTTCTGCTAACTTTGCTACTCCACAGCGGATG
ACAGCTGGAGTAGATCGTAACAGGGTTGCACTGGTATTGGCTGTTTTGGAGAAAAAGATAGGTATGTATATCCAGAGTCA
GGATGTTTATATTAATGTGGTTGGAGGGGTCAGGTTGAGTGAACCTGCCCTTGATTTAGGAATTGCTGTTGCCTGTGCTT
CGAGTTACCGTGAAAAACCGATCGATTCTAAAGTTGCAATTGTGGGTGAAGTAGGATTGGCCGGAGAAATACGGGCAGTC
CAGCAGATTGAAGCCAGAGTTAAAGAAGCAAAAAAATTGGGTTTTACCAGGGTGATCATGCCCTGGAGTAATTATAAAGC
TATGGACTTTGACCCTGAGATGGAATTAGTAGGAGTCAAAGATCTAAATGAAGCATTATCTTTATTGTTGGGAGGTGAAT
AA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(335-424)

AAA domain (AAA_25)

(58-216)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3Q9HSC8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

55.677

100

0.563
  radA Streptococcus pneumoniae Rx1

53.007

99.117

0.525
  radA Streptococcus pneumoniae D39

53.007

99.117

0.525
  radA Streptococcus pneumoniae R6

53.007

99.117

0.525
  radA Streptococcus pneumoniae TIGR4

53.007

99.117

0.525
  radA Streptococcus mitis NCTC 12261

53.007

99.117

0.525
  radA Streptococcus mitis SK321

53.007

99.117

0.525

Multiple sequence alignment