Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   B6R96_RS23930 Genome accession   NZ_CP020555
Coordinates   5355444..5357366 (-) Length   640 a.a.
NCBI ID   WP_030384586.1    Uniprot ID   -
Organism   Streptomyces sp. Sge12     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5350444..5362366
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B6R96_RS37735 - 5350788..5351273 (+) 486 WP_203351649.1 hypothetical protein -
  B6R96_RS23915 (B6R96_23915) - 5351319..5353394 (+) 2076 WP_081523595.1 molybdopterin oxidoreductase family protein -
  B6R96_RS23920 (B6R96_23920) - 5353497..5354717 (+) 1221 WP_237291502.1 RNA polymerase sigma factor -
  B6R96_RS23925 (B6R96_23925) - 5354798..5355313 (-) 516 WP_030384587.1 GNAT family N-acetyltransferase -
  B6R96_RS23930 (B6R96_23930) rcrQ 5355444..5357366 (-) 1923 WP_030384586.1 ABC transporter ATP-binding protein Regulator
  B6R96_RS23935 (B6R96_23935) rcrP 5357363..5359096 (-) 1734 WP_030384585.1 ABC transporter ATP-binding protein Regulator
  B6R96_RS23940 (B6R96_23940) - 5359243..5360694 (-) 1452 WP_053171528.1 FGGY family carbohydrate kinase -
  B6R96_RS23945 (B6R96_23945) - 5360802..5361104 (-) 303 WP_030384583.1 hypothetical protein -

Sequence

Protein


Download         Length: 640 a.a.        Molecular weight: 68913.36 Da        Isoelectric Point: 5.1093

>NTDB_id=187624 B6R96_RS23930 WP_030384586.1 5355444..5357366(-) (rcrQ) [Streptomyces sp. Sge12]
MSGPGGRMMMGPAQRSMDFKGSGKRLLRQLAYDRAKIWGMVAAVVGSVGCAVVGPKILGEATDLVFAGIVGREMPAGTTK
QQALDGLRARGQDGMADMLAGTDFTPGQGIDFGAVGVVAIWALVVFTLAGLLMLVATRLSNHVMNGTVYRMREELQAKLS
RLPLSYFDQQKRGEVLSRATNDIDNIGQTLQQTMGQLLNSLLTIVGVLVMMFWISPLLALVALATVPLSVFVAAKIGKKS
QPQFVAQWKSTGALNAHIEEMYSGHNLVKVFGRQKESAAVFAEQNEALYRASFKAQLVSGIMQPVMFFISNINYVLIAVV
GGLRVASGTLSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERVYELLDAAEQEPDAEVPERPEELRGQVTFDKV
AFRYEPDKPLIDNLSLTVEPGHTVAIVGPTGAGKTTLVNLLMRFYEVTGGEIALDGVDIAKMTREELRGGIGMVLQDTWL
FGGTIAENIAYGASREVTRAEIEEAARAAHADRFIRTLPDGYDTVLDDEGAGVSAGEKQLITIARAFLSDPVILVLDEAT
SSVDTRTEVLIQKAMARLARGRTSFVIAHRLSTIRDADVILVMESGSIVEQGTHEELLASDGAYARLYAAQFAQAVAEVD

Nucleotide


Download         Length: 1923 bp        

>NTDB_id=187624 B6R96_RS23930 WP_030384586.1 5355444..5357366(-) (rcrQ) [Streptomyces sp. Sge12]
ATGAGCGGGCCCGGAGGACGGATGATGATGGGGCCGGCCCAGCGGTCCATGGACTTCAAGGGCTCGGGGAAGCGGCTGCT
GCGGCAGCTCGCGTACGACCGGGCCAAGATCTGGGGCATGGTCGCGGCCGTCGTCGGCAGTGTCGGCTGCGCGGTGGTCG
GCCCGAAGATCCTCGGTGAGGCCACCGACCTGGTGTTCGCGGGGATCGTCGGCCGGGAGATGCCGGCCGGGACCACCAAG
CAGCAGGCGCTGGACGGGCTGCGCGCCCGGGGCCAGGACGGTATGGCGGACATGCTCGCCGGTACCGACTTCACCCCGGG
GCAGGGCATCGACTTCGGCGCCGTCGGCGTCGTGGCGATCTGGGCGCTGGTGGTCTTCACCCTGGCCGGCCTGCTGATGC
TGGTCGCGACGCGGCTGTCGAACCACGTCATGAACGGCACCGTCTACCGGATGCGCGAGGAGCTCCAGGCGAAGCTGTCG
CGGCTGCCGCTGTCGTACTTCGACCAGCAGAAGCGCGGCGAGGTGCTGAGCCGGGCCACGAACGACATCGACAACATCGG
CCAGACGCTCCAGCAGACGATGGGCCAGCTGCTGAACTCGCTGCTGACGATCGTCGGCGTGCTCGTGATGATGTTCTGGA
TCTCGCCGCTGCTGGCGCTGGTCGCGCTGGCGACCGTACCGCTGTCGGTGTTCGTCGCGGCGAAGATCGGCAAGAAGTCG
CAGCCGCAGTTCGTGGCGCAGTGGAAGTCGACGGGTGCGCTCAACGCCCACATCGAGGAGATGTACTCGGGGCACAACCT
GGTCAAGGTCTTCGGTCGGCAGAAGGAGTCCGCGGCCGTCTTCGCCGAGCAGAACGAGGCGCTGTACCGGGCCTCCTTCA
AGGCGCAGCTGGTCAGCGGCATCATGCAGCCGGTGATGTTCTTCATCTCGAACATCAACTACGTGCTGATAGCCGTGGTC
GGCGGGCTCCGGGTCGCGTCCGGCACGCTGTCGATCGGTGACGTGCAGGCCTTCATCCAGTACTCGCGGCAGTTCTCGAT
GCCGCTGACGCAGGTCGCCTCGATGGCGAACCTCGTGCAGTCCGGTGTCGCCTCCGCGGAGCGGGTCTACGAGCTGCTGG
ACGCGGCGGAGCAGGAGCCGGACGCCGAGGTTCCGGAGCGTCCGGAGGAGCTGCGCGGTCAGGTCACCTTCGACAAGGTG
GCCTTCCGCTACGAGCCGGACAAGCCGCTGATCGACAACCTCTCGCTCACGGTGGAGCCGGGCCACACGGTCGCGATCGT
CGGCCCGACCGGCGCCGGCAAGACCACGCTGGTCAATCTACTGATGCGGTTCTACGAGGTCACGGGCGGGGAGATCGCCC
TCGACGGGGTGGACATCGCGAAGATGACCCGCGAGGAACTACGCGGCGGCATCGGCATGGTGCTCCAGGACACCTGGCTG
TTCGGCGGCACCATCGCCGAGAACATCGCCTACGGTGCTTCGCGCGAGGTCACGCGCGCCGAGATCGAGGAGGCGGCGCG
GGCCGCCCACGCCGACCGGTTCATCCGCACCCTGCCGGACGGCTACGACACCGTGCTGGACGACGAGGGCGCGGGCGTCA
GCGCGGGCGAGAAGCAGCTGATCACCATCGCCCGGGCGTTCCTGTCGGACCCGGTGATCCTGGTGCTCGACGAGGCGACG
AGCTCGGTGGACACCCGTACCGAGGTGCTGATCCAGAAGGCGATGGCGCGCCTCGCGCGCGGCCGTACCTCCTTCGTGAT
CGCGCACCGGCTGTCCACGATCCGCGACGCGGACGTGATCCTTGTGATGGAGAGCGGCTCGATCGTGGAACAGGGCACGC
ACGAGGAGCTCCTGGCCTCGGACGGTGCGTACGCCCGGCTGTACGCGGCGCAGTTCGCGCAGGCGGTGGCCGAGGTCGAC
TAG

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(55-349)

ABC transporter (ABC_tran)

(412-561)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

40.193

97.188

0.391

Multiple sequence alignment