Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   B6R96_RS20830 Genome accession   NZ_CP020555
Coordinates   4649680..4650657 (+) Length   325 a.a.
NCBI ID   WP_081523206.1    Uniprot ID   -
Organism   Streptomyces sp. Sge12     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 4644680..4655657
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B6R96_RS20815 (B6R96_20815) - 4645966..4646685 (+) 720 WP_081523205.1 TetR/AcrR family transcriptional regulator -
  B6R96_RS20820 (B6R96_20820) - 4646748..4648280 (+) 1533 WP_053176775.1 MFS transporter -
  B6R96_RS20825 (B6R96_20825) - 4648392..4649165 (+) 774 WP_237291472.1 class III extradiol ring-cleavage dioxygenase -
  B6R96_RS20830 (B6R96_20830) rpoS 4649680..4650657 (+) 978 WP_081523206.1 sigma-70 family RNA polymerase sigma factor Regulator
  B6R96_RS20835 (B6R96_20835) - 4650725..4651678 (-) 954 WP_030386280.1 YafY family protein -
  B6R96_RS20840 (B6R96_20840) - 4651873..4653303 (+) 1431 WP_237291683.1 MFS transporter -
  B6R96_RS20845 (B6R96_20845) - 4653441..4654202 (+) 762 WP_081523208.1 DeoR/GlpR family DNA-binding transcription regulator -
  B6R96_RS20850 (B6R96_20850) pfkB 4654199..4655143 (+) 945 WP_081523209.1 1-phosphofructokinase -

Sequence

Protein


Download         Length: 325 a.a.        Molecular weight: 36507.19 Da        Isoelectric Point: 4.8910

>NTDB_id=187614 B6R96_RS20830 WP_081523206.1 4649680..4650657(+) (rpoS) [Streptomyces sp. Sge12]
MATRAVARRQSTSSARAVGGEIADRDLVGMYLDEIARTPLLDAAKEVELSQIIEAGVYAQQILDGAIEREGETPAREELE
ALAAEGERAKEVFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVRAVEKFDYAKGFKFSTYATWWIRQAITRSIADQ
SRTIRLPVHLVEELGRIRRIQREFNRENGRDPEHAEIAAELDSTEKRVGDVLDWARDPVSLNMSVDDDGDTQFGDLLEDT
SAISPEQSVLSLLRSEELEDLLGKLDQRTASIIKMRYGIDDGRERTLTEVGKQHGLTRERIRQIEKHALLELKRMARDTG
FDAVA

Nucleotide


Download         Length: 978 bp        

>NTDB_id=187614 B6R96_RS20830 WP_081523206.1 4649680..4650657(+) (rpoS) [Streptomyces sp. Sge12]
ATGGCAACCCGCGCCGTCGCCCGTCGTCAGTCCACGAGCAGCGCCCGCGCTGTGGGCGGGGAGATCGCAGACCGCGACCT
GGTCGGCATGTACCTGGACGAGATCGCGCGCACCCCGCTGCTCGACGCCGCCAAGGAAGTGGAGCTGTCCCAGATCATCG
AGGCGGGCGTCTACGCCCAGCAGATCCTCGACGGGGCGATAGAGCGGGAGGGGGAGACCCCGGCCCGCGAGGAGCTGGAG
GCGCTGGCCGCCGAGGGCGAGCGCGCCAAGGAAGTCTTCATCCGCTCCAACCTCCGTCTCGTCGTGGCCGTCGCCCGGCG
CTATCCGCGCAGCGGTCTGCCCCTGCTCGACCTGATCCAGGAGGGCAACGCCGGCCTGGTCCGCGCGGTCGAGAAGTTCG
ACTACGCCAAGGGCTTCAAGTTCTCCACGTACGCCACGTGGTGGATCCGGCAGGCGATCACCCGGTCCATCGCGGACCAG
TCCCGCACCATCCGCCTCCCCGTCCACCTGGTCGAGGAGCTCGGCCGGATCCGCCGCATCCAGCGCGAATTCAACCGCGA
GAACGGCCGCGACCCGGAGCACGCCGAGATCGCCGCCGAGCTGGACTCGACGGAGAAGCGCGTGGGCGACGTACTGGACT
GGGCGCGCGACCCGGTCAGCCTGAACATGTCGGTCGACGACGACGGCGACACCCAGTTCGGTGACCTCCTGGAGGACACC
TCGGCGATCTCGCCCGAGCAGTCCGTGCTCTCCCTGCTGCGCAGCGAGGAGCTGGAGGACCTGCTGGGCAAGCTCGACCA
GCGCACGGCGTCGATCATCAAGATGCGGTACGGCATCGACGACGGCCGCGAGCGGACCCTGACGGAGGTCGGCAAGCAGC
ACGGCCTGACCCGTGAGCGGATCCGCCAGATCGAGAAGCACGCGCTGCTGGAGCTGAAGCGGATGGCGCGCGACACCGGC
TTCGACGCGGTGGCCTGA

Domains

Predicted by InterProScan.

Sigma-70, region 4 (Sigma70_r4)

(261-313)

Sigma-70 region 2 (Sigma70_r2)

(93-162)

Sigma-70 region 3 (Sigma70_r3)

(172-248)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(26-59)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

39.667

92.308

0.366