Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   B6R96_RS10700 Genome accession   NZ_CP020555
Coordinates   2489866..2492058 (-) Length   730 a.a.
NCBI ID   WP_081522355.1    Uniprot ID   -
Organism   Streptomyces sp. Sge12     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2484866..2497058
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B6R96_RS10670 (B6R96_10670) rnc 2485756..2486604 (-) 849 WP_053177518.1 ribonuclease III -
  B6R96_RS10675 (B6R96_10675) rpmF 2486624..2486797 (-) 174 WP_003965982.1 50S ribosomal protein L32 -
  B6R96_RS10680 (B6R96_10680) - 2486800..2487510 (-) 711 WP_081522353.1 DUF177 domain-containing protein -
  B6R96_RS10685 (B6R96_10685) - 2487579..2488616 (-) 1038 WP_081522354.1 ATP synthase F0 subunit B -
  B6R96_RS10690 (B6R96_10690) coaD 2488720..2489199 (-) 480 WP_030386429.1 pantetheine-phosphate adenylyltransferase -
  B6R96_RS10695 (B6R96_10695) rsmD 2489214..2489792 (-) 579 WP_053177525.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  B6R96_RS10700 (B6R96_10700) recG 2489866..2492058 (-) 2193 WP_081522355.1 ATP-dependent DNA helicase RecG Machinery gene
  B6R96_RS10705 (B6R96_10705) - 2492085..2493773 (-) 1689 WP_081522356.1 DAK2 domain-containing protein -
  B6R96_RS10710 (B6R96_10710) rpmB 2494014..2494199 (+) 186 WP_007266795.1 50S ribosomal protein L28 -
  B6R96_RS10715 (B6R96_10715) thiD 2494287..2495087 (-) 801 WP_053702002.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  B6R96_RS10720 (B6R96_10720) - 2495084..2496067 (-) 984 WP_030386434.1 thiamine-phosphate kinase -
  B6R96_RS10725 (B6R96_10725) - 2496313..2496546 (+) 234 WP_030386435.1 Lrp/AsnC ligand binding domain-containing protein -

Sequence

Protein


Download         Length: 730 a.a.        Molecular weight: 78992.56 Da        Isoelectric Point: 6.1486

>NTDB_id=187585 B6R96_RS10700 WP_081522355.1 2489866..2492058(-) (recG) [Streptomyces sp. Sge12]
MEHVPALDEDLKKTLGPATAKVLAEQLGLHTALDLLHHYPRRYAERGELTSLAELADQIDEHVTVVAQVADARILTFNGG
RGKRLEVTITDGSGRLQLVFFGAGVHKPHKDLLPGSRAMFAGKVSKFNHKLQLAHPAYEPLGADASDRDAATAFASQLIP
IYPACAKLESWKIAKCVDAVLPSAQEAVDPLPPALREGRGLVPLTEALLKIHRPGTKADIEDARQRLKWDEAFVLQVALA
RRRHADSQLPAVPRRPLPGGLLDAFDAKLPFTLTQGQETVSKEIFDDLATDHPMHRLLQGEVGSGKTMVALRAMLAVVDS
GGQAAMLAPTEVLAQQHHRSITEMMGELAEGGMLGGSDQGTKVVLLTGSMGMPARRQALLDLVTGEAGIVIGTHALIEDK
VQFHDLGLVVVDEQHRFGVEQRDALRSKGKQPPHLLVMTATPIPRTVAMTVFGDLETSVLDQLPAGRSPIATHVVPSKDK
PHFLARAWERVREEVEKGHQAYVVCPRIGDGEDDPKKKAAGDDGERRPPLAVVEIAEQLARGPLAGLSVEVLHGRMDPAD
KDDVMRRFAAGEVKVLVATTVIEVGVNVPNSTVMVIMDADRFGVSQLHQLRGRVGRGSAPGLCLLVSEMHEASPARARLA
AVAATLDGFELSRIDLEQRREGDVLGQAQSGVRSSLRMLAVIEDEEVIAEAREEATRVVAEDPALERLPGLRTALEALLD
TEREQYLEKG

Nucleotide


Download         Length: 2193 bp        

>NTDB_id=187585 B6R96_RS10700 WP_081522355.1 2489866..2492058(-) (recG) [Streptomyces sp. Sge12]
ATGGAACACGTGCCCGCGCTCGACGAAGACCTCAAGAAGACGCTCGGTCCCGCCACCGCCAAGGTGCTGGCCGAGCAGCT
CGGCCTGCACACGGCCCTGGACCTGCTCCACCACTACCCCCGGCGGTACGCCGAGCGCGGTGAGCTGACCTCGCTGGCCG
AGCTCGCCGACCAGATCGACGAGCACGTGACCGTCGTCGCACAGGTCGCCGACGCCCGGATCCTGACCTTCAACGGGGGC
CGCGGCAAGCGCCTGGAGGTGACCATCACCGACGGCAGCGGCCGCCTCCAGCTCGTCTTCTTCGGCGCCGGGGTCCACAA
ACCGCACAAGGACCTGCTCCCCGGCAGCCGCGCGATGTTCGCCGGCAAGGTCTCCAAGTTCAACCACAAGCTCCAGCTCG
CGCACCCGGCCTACGAGCCGCTCGGCGCGGACGCCTCCGACCGCGACGCCGCGACCGCCTTCGCCAGTCAGCTCATCCCG
ATCTACCCGGCCTGCGCGAAGCTGGAGTCCTGGAAGATCGCCAAGTGCGTGGACGCGGTGCTGCCCAGCGCCCAGGAGGC
CGTGGACCCGCTGCCGCCCGCCCTGCGCGAGGGCCGCGGGCTGGTCCCGCTCACCGAGGCCCTCCTGAAGATCCACCGGC
CGGGCACCAAAGCCGACATCGAGGACGCCCGCCAGCGCCTCAAGTGGGACGAGGCCTTCGTCCTCCAGGTCGCCCTGGCC
CGCCGCCGGCACGCCGACTCCCAGCTCCCGGCCGTCCCCCGCCGCCCGCTCCCCGGCGGCCTGCTCGACGCCTTCGACGC
GAAACTGCCCTTCACCCTCACCCAGGGCCAGGAGACCGTCTCGAAGGAGATCTTCGACGACCTGGCCACCGACCACCCCA
TGCACCGCCTCCTCCAGGGCGAGGTCGGAAGCGGGAAGACGATGGTGGCCCTGCGGGCCATGCTCGCCGTCGTCGACAGC
GGCGGGCAGGCGGCCATGCTCGCGCCCACGGAGGTGCTCGCCCAGCAGCACCACCGCTCCATCACCGAGATGATGGGGGA
GCTCGCCGAGGGGGGCATGCTCGGCGGCTCCGACCAGGGCACCAAGGTCGTGCTGCTCACCGGCTCCATGGGCATGCCCG
CCCGCCGCCAGGCCCTGCTCGACCTGGTCACCGGCGAGGCCGGCATCGTGATCGGCACGCACGCGCTGATCGAGGACAAG
GTGCAGTTCCACGACCTCGGCCTGGTCGTCGTGGACGAGCAGCACCGCTTCGGGGTGGAGCAGCGCGACGCACTGCGCTC
CAAGGGCAAGCAACCCCCGCACCTGCTGGTGATGACGGCGACCCCGATCCCGCGCACGGTCGCCATGACCGTCTTCGGCG
ACCTGGAGACCTCCGTCCTGGACCAGCTGCCGGCCGGGCGCTCCCCGATCGCGACGCACGTGGTGCCCTCCAAGGACAAG
CCGCACTTCCTCGCCCGGGCCTGGGAGCGGGTCCGCGAGGAGGTCGAGAAGGGGCACCAGGCGTATGTGGTCTGCCCCCG
CATCGGCGACGGCGAGGACGACCCCAAGAAGAAGGCCGCCGGGGACGACGGCGAACGGCGGCCGCCGCTCGCCGTCGTGG
AGATCGCCGAGCAGCTCGCCCGCGGCCCGCTGGCCGGGTTGAGCGTCGAGGTGCTGCACGGCCGGATGGACCCCGCCGAC
AAGGACGACGTCATGCGCCGGTTCGCCGCCGGCGAGGTCAAGGTGCTGGTCGCCACCACCGTCATCGAGGTCGGGGTGAA
CGTCCCCAACTCCACGGTCATGGTGATCATGGACGCGGACCGGTTCGGCGTCTCCCAGCTCCACCAGCTGCGCGGACGCG
TGGGCCGCGGCTCCGCACCGGGGCTGTGCCTGCTGGTCAGCGAGATGCACGAGGCGAGCCCCGCCCGGGCCCGGCTCGCC
GCCGTCGCCGCCACCCTCGACGGCTTCGAACTCTCCCGGATCGACCTGGAACAGCGCCGCGAGGGCGACGTCCTGGGCCA
GGCCCAGTCCGGAGTCCGCTCCTCGCTGCGCATGCTCGCCGTCATCGAGGACGAGGAGGTCATCGCCGAGGCACGGGAGG
AGGCCACCCGCGTCGTCGCCGAGGACCCCGCGCTGGAGCGGCTGCCGGGTCTGCGGACCGCGCTGGAGGCCCTGCTCGAC
ACCGAGCGCGAGCAGTACCTGGAGAAGGGCTGA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(539-617)

DEAD/DEAH box helicase (DEAD)

(295-447)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(645-706)

OB-fold nucleic acid binding domain (tRNA_anti-codon)

(63-141)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

38.937

95.342

0.371