Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   B6R96_RS09605 Genome accession   NZ_CP020555
Coordinates   2230725..2231519 (+) Length   264 a.a.
NCBI ID   WP_030389417.1    Uniprot ID   -
Organism   Streptomyces sp. Sge12     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2225725..2236519
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B6R96_RS09595 (B6R96_09600) - 2226711..2229599 (-) 2889 WP_030389419.1 vitamin B12-dependent ribonucleotide reductase -
  B6R96_RS09600 (B6R96_09605) nrdR 2229743..2230255 (-) 513 WP_053173261.1 transcriptional regulator NrdR -
  B6R96_RS09605 (B6R96_09610) dinR/lexA 2230725..2231519 (+) 795 WP_030389417.1 transcriptional repressor LexA Regulator
  B6R96_RS09610 (B6R96_09615) - 2231623..2233593 (-) 1971 WP_081522256.1 ATP-dependent DNA helicase -
  B6R96_RS09615 (B6R96_09620) - 2233646..2235547 (-) 1902 WP_081522257.1 IucA/IucC family siderophore biosynthesis protein -
  B6R96_RS09620 (B6R96_09625) - 2235647..2236372 (-) 726 WP_081522258.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 28586.40 Da        Isoelectric Point: 7.4240

>NTDB_id=187580 B6R96_RS09605 WP_030389417.1 2230725..2231519(+) (dinR/lexA) [Streptomyces sp. Sge12]
MTTTADSAAITAQNRSQSRLEPVHAMNDANVNPEAEPVVRPARSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYP
PSMREIGQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQPSSQPTDTTGKPAASYVPLVGRIAAGGPILAE
ESVEDVFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKREDGHVWLLPHN
AAYQPIPGDEATILGKVVAVLRRV

Nucleotide


Download         Length: 795 bp        

>NTDB_id=187580 B6R96_RS09605 WP_030389417.1 2230725..2231519(+) (dinR/lexA) [Streptomyces sp. Sge12]
GTGACCACCACCGCAGACAGTGCCGCCATCACTGCCCAGAACCGCTCCCAGAGCCGACTCGAGCCGGTGCATGCCATGAA
CGATGCAAACGTGAACCCGGAGGCGGAGCCCGTCGTACGCCCCGCACGTTCGCTGCCAGGTCGACCTCCAGGCATCCGCG
CCGACAGCTCCGGACTCACGGACCGGCAGCGGAGGGTCATCGAGGTCATTCGCGACTCCGTGCAGCGGCGGGGTTACCCG
CCGTCGATGCGGGAGATCGGTCAGGCGGTCGGCCTGTCCAGCACGTCGTCCGTCGCCCACCAGCTGATGGCCCTGGAGCG
CAAGGGCTTCCTGCGTCGGGACCCGCACCGCCCCCGCGCCTACGAGGTGCGCGGCTCGGACCAGCCCAGCTCGCAGCCCA
CGGACACCACCGGCAAGCCCGCCGCCTCCTACGTTCCCCTGGTCGGCCGGATCGCGGCCGGCGGCCCGATCCTCGCCGAG
GAGTCGGTCGAGGACGTGTTCCCGCTCCCCCGGCAGCTCGTCGGTGACGGCGAGCTCTTCGTCCTCAAGGTCGTCGGCGA
CTCGATGATCGAGGCCGCCATCTGCGACGGCGACTGGGTCACGGTCCGTCGCCAGCCCGTCGCGGAGAACGGCGACATCG
TCGCCGCGATGCTCGACGGCGAGGCCACCGTCAAGCGTTTCAAGCGCGAGGACGGCCATGTCTGGCTCCTCCCGCACAAC
GCCGCCTACCAGCCGATCCCCGGCGACGAGGCCACCATCCTCGGCAAGGTCGTCGCGGTACTGCGTCGGGTCTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(146-258)

LexA DNA binding domain (LexA_DNA_bind)

(57-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

46.698

80.303

0.375