Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   B6V57_RS25415 Genome accession   NZ_CP020545
Coordinates   4881679..4882155 (+) Length   158 a.a.
NCBI ID   WP_001622578.1    Uniprot ID   -
Organism   Escherichia coli strain ZJ3920     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4876679..4887155
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B6V57_RS25390 (B6V57_25230) - 4879717..4879912 (+) 196 Protein_4660 DUF905 family protein -
  B6V57_RS25400 (B6V57_25240) - 4880030..4880848 (+) 819 WP_001622577.1 DUF932 domain-containing protein -
  B6V57_RS25410 (B6V57_25250) - 4881190..4881663 (+) 474 WP_001350782.1 antirestriction protein -
  B6V57_RS25415 (B6V57_25255) radC 4881679..4882155 (+) 477 WP_001622578.1 RadC family protein Machinery gene
  B6V57_RS25420 (B6V57_25260) - 4882218..4882439 (+) 222 WP_000692345.1 DUF987 domain-containing protein -
  B6V57_RS25425 (B6V57_25270) - 4882602..4882970 (+) 369 WP_001295723.1 type IV toxin-antitoxin system YeeU family antitoxin -
  B6V57_RS25430 (B6V57_25275) - 4883060..4883158 (+) 99 Protein_4666 TA system toxin CbtA family protein -
  B6V57_RS25435 (B6V57_25280) mtnK 4883898..4885157 (+) 1260 WP_000132327.1 S-methyl-5-thioribose kinase -
  B6V57_RS25440 (B6V57_25285) mtnA 4885167..4886282 (+) 1116 WP_001022014.1 S-methyl-5-thioribose-1-phosphate isomerase -
  B6V57_RS25445 (B6V57_25290) - 4886313..4886954 (+) 642 WP_080282651.1 L-fuculose-phosphate aldolase -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17672.37 Da        Isoelectric Point: 7.5716

>NTDB_id=187559 B6V57_RS25415 WP_001622578.1 4881679..4882155(+) (radC) [Escherichia coli strain ZJ3920]
MQQLSFLPGEMTPGERSLILRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNKLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEYGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=187559 B6V57_RS25415 WP_001622578.1 4881679..4882155(+) (radC) [Escherichia coli strain ZJ3920]
ATGCAACAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATAAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCTGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAATATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-156)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399

Multiple sequence alignment