Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   B6V57_RS20635 Genome accession   NZ_CP020545
Coordinates   3964322..3964990 (-) Length   222 a.a.
NCBI ID   WP_001297375.1    Uniprot ID   P65957
Organism   Escherichia coli strain ZJ3920     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3959322..3969990
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B6V57_RS20605 (B6V57_20475) rfaQ 3959500..3960558 (-) 1059 WP_000360396.1 lipopolysaccharide core heptosyltransferase RfaQ -
  B6V57_RS20610 (B6V57_20480) waaA 3960971..3962248 (+) 1278 WP_000891546.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  B6V57_RS20615 (B6V57_20485) coaD 3962256..3962735 (+) 480 WP_001171873.1 pantetheine-phosphate adenylyltransferase -
  B6V57_RS20620 (B6V57_20490) mutM 3962774..3963583 (-) 810 WP_001114533.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  B6V57_RS20625 (B6V57_20495) rpmG 3963681..3963848 (-) 168 WP_001051798.1 50S ribosomal protein L33 -
  B6V57_RS20630 (B6V57_20500) rpmB 3963869..3964105 (-) 237 WP_000091955.1 50S ribosomal protein L28 -
  B6V57_RS20635 (B6V57_20505) radC 3964322..3964990 (-) 669 WP_001297375.1 DNA repair protein RadC Machinery gene
  B6V57_RS20640 (B6V57_20510) coaBC 3965162..3966382 (+) 1221 WP_000050149.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  B6V57_RS20645 (B6V57_20515) dut 3966360..3966818 (+) 459 WP_000976066.1 dUTP diphosphatase -
  B6V57_RS20650 (B6V57_20520) slmA 3966925..3967521 (+) 597 WP_000818598.1 nucleoid occlusion factor SlmA -
  B6V57_RS20655 (B6V57_20525) pyrE 3967558..3968199 (-) 642 WP_000806174.1 orotate phosphoribosyltransferase -
  B6V57_RS20660 (B6V57_20530) rph 3968265..3968981 (-) 717 WP_001247093.1 ribonuclease PH -
  B6V57_RS20670 (B6V57_20540) yicC 3969108..3969971 (+) 864 WP_000621332.1 YicC/YloC family endoribonuclease -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25258.35 Da        Isoelectric Point: 7.9748

>NTDB_id=187533 B6V57_RS20635 WP_001297375.1 3964322..3964990(-) (radC) [Escherichia coli strain ZJ3920]
MKNNAQLLMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQL
KGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHSRLFSGTLNHVEVHPREIIREAI
KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAERGWI

Nucleotide


Download         Length: 669 bp        

>NTDB_id=187533 B6V57_RS20635 WP_001297375.1 3964322..3964990(-) (radC) [Escherichia coli strain ZJ3920]
GTGAAAAACAATGCACAGCTGTTGATGCCGCGCGAAAAAATGCTGAAGTTTGGTATTAGCGCCTTAACGGATGTCGAGCT
GTTGGCGCTATTTCTGCGTACCGGAACGCGCGGTAAAGATGTATTAACCCTGGCAAAAGAGATGCTGGAGAATTTCGGCT
CTCTTTATGGCTTGTTAACCTCTGAATATGAGCAATTTAGTGGCGTTCATGGAATTGGCGTGGCGAAATTCGCCCAGTTA
AAGGGGATTGCCGAACTGGCGCGGCGTTACTACAACGTACGGATGCGTGAAGAAAGCCCTTTACTCAGCCCGGAGATGAC
GAGGGAATTTTTACAAAGCCAGCTCACGGGCGAGGAGCGGGAGATCTTTATGGTGATCTTTCTCGACTCCCAACACCGGG
TTATAACGCATAGCCGTCTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGCGAAGCGATA
AAAATAAACGCCTCGGCGCTGATCCTTGCGCATAATCACCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCAT
TACTGAACGGATAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAGAGTATG
TTTCTTTTGCCGAACGCGGCTGGATTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(103-220)

UPF0758 N-terminal (UPF0758_N)

(9-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P65957

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.55

100

0.496