Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   B6V57_RS17400 Genome accession   NZ_CP020545
Coordinates   3341536..3342012 (-) Length   158 a.a.
NCBI ID   WP_001360063.1    Uniprot ID   -
Organism   Escherichia coli strain ZJ3920     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3336536..3347012
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B6V57_RS17360 (B6V57_17235) mug 3337875..3338381 (-) 507 WP_000228937.1 G/U mismatch-specific DNA glycosylase -
  B6V57_RS17370 (B6V57_17245) - 3338681..3339526 (-) 846 WP_001280427.1 DUF4942 domain-containing protein -
  B6V57_RS17375 (B6V57_17250) - 3339611..3339808 (-) 198 WP_000445281.1 DUF957 domain-containing protein -
  B6V57_RS17380 (B6V57_17255) - 3339828..3340316 (-) 489 WP_000761669.1 DUF5983 family protein -
  B6V57_RS17385 (B6V57_17260) - 3340313..3340690 (-) 378 WP_148123943.1 TA system toxin CbtA family protein -
  B6V57_RS17390 (B6V57_17265) - 3340780..3341148 (-) 369 WP_001285576.1 type IV toxin-antitoxin system YeeU family antitoxin -
  B6V57_RS17395 (B6V57_17270) - 3341228..3341449 (-) 222 WP_000692176.1 DUF987 domain-containing protein -
  B6V57_RS17400 (B6V57_17275) radC 3341536..3342012 (-) 477 WP_001360063.1 RadC family protein Machinery gene
  B6V57_RS17410 (B6V57_17280) - 3342028..3342513 (-) 486 WP_000206656.1 antirestriction protein -
  B6V57_RS17415 (B6V57_17285) - 3342605..3343423 (-) 819 WP_021520251.1 DUF932 domain-containing protein -
  B6V57_RS17425 (B6V57_17290) - 3343750..3346596 (-) 2847 WP_096917976.1 Ag43/Cah family autotransporter adhesin -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17644.24 Da        Isoelectric Point: 7.0394

>NTDB_id=187522 B6V57_RS17400 WP_001360063.1 3341536..3342012(-) (radC) [Escherichia coli strain ZJ3920]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTHAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALHHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALALVDIRVPDHLIIGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=187522 B6V57_RS17400 WP_001360063.1 3341536..3342012(-) (radC) [Escherichia coli strain ZJ3920]
ATGCAGCAGCTTTCCTTTCTGCCAGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAGCGGGCCCTGAAAACTCTGGA
CCGTCATCTTCATGAACCCGGTGTGGCCTTCACCTCCACGCATGCGGCACGGGAATGGCTGATTCTGAACATGGCAGGAC
TGGAGCGGGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACAGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAGGTGATTAAACGCGCCCTGCACCACAATGCCGCTGCCGTGGTACTGGCACA
CAATCATCCGTCCGGTGAAGTCACACCCAGTAAGGCTGACCGCCTTATTACGGAACGTCTGGTACAGGCACTGGCCCTGG
TTGACATCCGGGTGCCGGACCATCTGATAATCGGTGGCAGCCAGGTTTTCTCCTTTGCGGAACACGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

57.692

65.823

0.38