Detailed information NTG0187512

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: B6V57_RS14960
• Genome accession: NZ_CP020545
• Coordinates: 2855954..2856946 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain ZJ3920
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2850954..2861946

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
B6V57_RS14940 (B6V57_14835)	ygbM	2851585..2852361 (+)	777	WP_001136908.1	HPr family phosphocarrier protein	-
B6V57_RS14945 (B6V57_14840)	ygbN	2852450..2853814 (+)	1365	WP_000104443.1	GntP family transporter	-
B6V57_RS14950 (B6V57_14845)	-	2853957..2855000 (-)	1044	WP_001161578.1	MBL fold metallo-hydrolase	-
B6V57_RS14955 (B6V57_14850)	-	2855225..2855776 (+)	552	WP_001179442.1	flavodoxin family protein	-
B6V57_RS14960 (B6V57_14855)	rpoS	2855954..2856946 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
B6V57_RS14965 (B6V57_14860)	nlpD	2857009..2858103 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
B6V57_RS14970 (B6V57_14865)	pcm	2858288..2858914 (-)	627	WP_000254701.1	protein-L-isoaspartate O-methyltransferase	-
B6V57_RS14975 (B6V57_14870)	surE	2858908..2859669 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
B6V57_RS14980 (B6V57_14875)	truD	2859650..2860699 (-)	1050	WP_148123938.1	tRNA pseudouridine(13) synthase TruD	-
B6V57_RS14985 (B6V57_14880)	ispF	2860696..2861175 (-)	480	WP_001219247.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
B6V57_RS14990 (B6V57_14885)	ispD	2861175..2861885 (-)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=187512 B6V57_RS14960 WP_000081550.1 2855954..2856946(-) (rpoS) [Escherichia coli strain ZJ3920]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=187512 B6V57_RS14960 WP_000081550.1 2855954..2856946(-) (rpoS) [Escherichia coli strain ZJ3920]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715