Detailed information NTG0187511

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: A5891_RS17300
• Genome accession: NZ_CP016371
• Coordinates: 3581849..3582994 (+)
• Length: 381 a.a.
• NCBI ID: WP_074534220.1
• Uniprot ID: -
• Organism: Bacillus velezensis strain S3-1
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 3576849..3587994

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
A5891_RS17280 (A5891_17280)	-	3577746..3578174 (-)	429	WP_032869448.1	DUF1934 domain-containing protein	-
A5891_RS17285 (A5891_17285)	-	3578328..3578840 (+)	513	Protein_3427	bacteriocin biosynthesis protein AlbG	-
A5891_RS17290 (A5891_17290)	-	3578847..3580223 (-)	1377	WP_032875890.1	YncE family protein	-
A5891_RS17295 (A5891_17295)	-	3580263..3581618 (-)	1356	WP_032875887.1	YncE family protein	-
A5891_RS17300 (A5891_17300)	rapF	3581849..3582994 (+)	1146	WP_074534220.1	Rap family tetratricopeptide repeat protein	Regulator
A5891_RS19725	-	3582978..3583097 (+)	120	WP_017418707.1	PhrC/PhrF family phosphatase-inhibitory pheromone	-
A5891_RS17305 (A5891_17305)	speB	3583220..3584092 (-)	873	WP_032875884.1	agmatinase	-
A5891_RS17310 (A5891_17310)	speE	3584151..3584981 (-)	831	WP_003151052.1	spermidine synthase	-
A5891_RS17315 (A5891_17315)	-	3585181..3587253 (+)	2073	WP_032875881.1	transglycosylase domain-containing protein	-
A5891_RS17320 (A5891_17320)	-	3587278..3587711 (-)	434	Protein_3435	hypothetical protein	-

Sequence

Protein

• Length: 381 a.a.
• Molecular weight: 45737.21 Da
• Isoelectric Point: 5.0614

>NTDB_id=187511 A5891_RS17300 WP_074534220.1 3581849..3582994(+) (rapF) [Bacillus velezensis strain S3-1]
MASVLSSSAVGEKINEWYMYIRRFSIPDAEYLRREIKEELAGLEDDQDLHLYYSLMEFRHNLMLEYLEPLESQRIEEQPR
LSDLLADIDKKQARLTGRLDYYFNFFRGMYELECREYLSAIQFFKKAESKLTYVKDHIEKAEFYFKMSEVYYYMKQTYVS
MDYARQAYLIYKDAEKYNIRLTQCHSLFGANYLDVKQYDHAISHFQKAYTMAELEQQPQLMGRTLFNIALCHNNQNNKVE
AIPHLKEAIAVFEKAQMSHSLPQPYFLLTQIYFKLKNIDNAYDYHKKGISICKEIDDIIYEEKFKFLEYLYMPDPRDTLI
NDCLHFLENKLMYADIEELALDVAKYYYTQEEYKKASVYFLKVEEARQQIEGGVNLYEIEV

Nucleotide

• Length: 1146 bp

>NTDB_id=187511 A5891_RS17300 WP_074534220.1 3581849..3582994(+) (rapF) [Bacillus velezensis strain S3-1]
GTGGCGAGTGTTTTATCATCTTCAGCGGTTGGAGAAAAAATCAACGAATGGTATATGTACATTCGAAGGTTCAGCATCCC
GGACGCCGAGTACTTGCGGAGAGAAATCAAAGAAGAACTTGCAGGTCTGGAAGATGATCAGGATCTTCATCTATACTATT
CTCTCATGGAATTCCGTCACAATCTGATGCTCGAATACCTCGAACCGCTGGAATCGCAGCGGATAGAAGAACAGCCGAGA
CTATCGGATCTGCTCGCGGATATTGATAAAAAGCAGGCCCGGCTGACCGGACGTCTTGATTATTATTTTAATTTTTTCCG
GGGGATGTATGAGCTGGAATGCCGTGAATATCTTTCAGCGATTCAGTTTTTTAAGAAAGCTGAAAGCAAACTGACGTACG
TTAAAGATCATATAGAAAAAGCTGAATTTTACTTTAAAATGTCAGAAGTCTATTATTATATGAAACAAACTTATGTATCG
ATGGATTATGCGCGGCAGGCTTATTTAATTTATAAAGATGCAGAAAAATATAATATTAGATTAACCCAGTGCCATTCTTT
ATTTGGGGCTAATTATCTTGATGTAAAGCAATACGATCACGCGATTTCCCACTTTCAAAAGGCATATACGATGGCTGAAT
TGGAGCAGCAGCCGCAATTAATGGGGAGGACACTTTTTAACATCGCTTTATGCCATAATAATCAAAACAATAAAGTCGAG
GCTATTCCCCATTTAAAAGAAGCCATAGCTGTTTTTGAAAAAGCTCAAATGAGTCATTCACTTCCGCAGCCCTACTTCTT
ACTTACACAGATTTATTTTAAGTTAAAAAATATAGATAACGCGTACGATTATCATAAAAAAGGTATCTCAATATGTAAGG
AAATAGATGATATAATTTACGAGGAAAAATTTAAATTTTTAGAATACTTGTATATGCCGGATCCAAGAGATACATTAATA
AACGATTGTCTGCATTTTCTTGAAAATAAATTGATGTATGCTGATATTGAGGAATTAGCCCTTGATGTAGCTAAATATTA
TTACACACAAGAAGAATATAAAAAAGCTTCTGTCTACTTTTTAAAGGTTGAAGAAGCCAGACAGCAGATCGAAGGAGGAG
TGAATTTATATGAAATTGAAGTATAA

Domains

Predicted by InterproScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (5-65)

• Tetratricopeptide repeat (TPR_12) (188-254)

• Tetratricopeptide repeat (TPR_8) (265-293)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	70.079	100	0.701
rapC	Bacillus subtilis subsp. subtilis str. 168	54.211	99.738	0.541