Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   B6V57_RS10910 Genome accession   NZ_CP020545
Coordinates   2060002..2061429 (+) Length   475 a.a.
NCBI ID   WP_000980562.1    Uniprot ID   -
Organism   Escherichia coli strain ZJ3920     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2055002..2066429
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B6V57_RS10870 (B6V57_10800) yeeW 2055186..2055380 (+) 195 WP_000988600.1 DUF5983 family protein -
  B6V57_RS28655 - 2055426..2055506 (+) 81 Protein_1999 hypothetical protein -
  B6V57_RS10880 (B6V57_10805) - 2055795..2055941 (-) 147 Protein_2000 transposase domain-containing protein -
  B6V57_RS10885 (B6V57_10810) - 2055995..2056177 (+) 183 WP_001016349.1 EutP/PduV family microcompartment system protein -
  B6V57_RS10890 (B6V57_10815) tmaR 2056278..2056607 (-) 330 WP_000450409.1 DUF496 family protein -
  B6V57_RS10895 (B6V57_10820) yeeA 2056779..2057837 (-) 1059 WP_001200892.1 FUSC family protein -
  B6V57_RS10900 (B6V57_10825) sbmC 2058035..2058508 (-) 474 WP_001105376.1 DNA gyrase inhibitor SbmC -
  B6V57_RS10905 (B6V57_10830) dacD 2058627..2059793 (-) 1167 WP_001296209.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  B6V57_RS10910 (B6V57_10835) sbcB 2060002..2061429 (+) 1428 WP_000980562.1 exodeoxyribonuclease I Machinery gene
  B6V57_RS10915 (B6V57_10840) tsuB 2061472..2061699 (-) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  B6V57_RS10920 (B6V57_10845) tsuA 2061713..2062771 (-) 1059 WP_000492334.1 thiosulfate utilization transporter TsuA/YeeE -
  B6V57_RS10925 (B6V57_10850) plaP 2062950..2064308 (-) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  B6V57_RS10930 yoeI 2064298..2064360 (-) 63 WP_010723108.1 membrane protein YoeI -
  B6V57_RS10935 (B6V57_10855) yeeY 2064575..2065504 (-) 930 WP_000803363.1 LysR substrate-binding domain-containing protein -
  B6V57_RS10940 (B6V57_10860) yeeZ 2065550..2066374 (-) 825 WP_000754737.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54484.82 Da        Isoelectric Point: 5.7523

>NTDB_id=187499 B6V57_RS10910 WP_000980562.1 2060002..2061429(+) (sbcB) [Escherichia coli strain ZJ3920]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAKEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=187499 B6V57_RS10910 WP_000980562.1 2060002..2061429(+) (sbcB) [Escherichia coli strain ZJ3920]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGAACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACTGATAACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGATGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGT
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGAGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTTGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGCTACGCTGATGAATTGCAGATGCTGGCACAACAGT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGAAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581

Multiple sequence alignment