Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   A5891_RS02005 Genome accession   NZ_CP016371
Coordinates   400331..401284 (+) Length   317 a.a.
NCBI ID   WP_032872883.1    Uniprot ID   -
Organism   Bacillus velezensis strain S3-1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 395331..406284
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A5891_RS01980 (A5891_01980) - 395375..396808 (+) 1434 WP_161503657.1 sensor histidine kinase -
  A5891_RS01985 (A5891_01985) rapC 396961..398109 (+) 1149 WP_007410270.1 Rap family tetratricopeptide repeat protein Regulator
  A5891_RS01990 (A5891_01990) phrC 398093..398212 (+) 120 WP_003156334.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  A5891_RS01995 (A5891_01995) - 398363..398473 (-) 111 WP_369878517.1 YjcZ family sporulation protein -
  A5891_RS02000 (A5891_02000) - 398553..399917 (-) 1365 WP_007609394.1 aspartate kinase -
  A5891_RS02005 (A5891_02005) ceuB 400331..401284 (+) 954 WP_032872883.1 ABC transporter permease Machinery gene
  A5891_RS02010 (A5891_02010) - 401274..402221 (+) 948 WP_014416905.1 iron chelate uptake ABC transporter family permease subunit -
  A5891_RS02015 (A5891_02015) - 402215..402973 (+) 759 WP_007609404.1 ABC transporter ATP-binding protein -
  A5891_RS02020 (A5891_02020) - 402995..403939 (+) 945 WP_003156329.1 siderophore ABC transporter substrate-binding protein -
  A5891_RS02025 (A5891_02025) - 403981..405405 (-) 1425 WP_045555063.1 MDR family MFS transporter -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34931.21 Da        Isoelectric Point: 9.6741

>NTDB_id=187450 A5891_RS02005 WP_032872883.1 400331..401284(+) (ceuB) [Bacillus velezensis strain S3-1]
MKLRYLLLLLAVLACTSIFIGVEDLSPLDIFHLNKEQAGTLFDSRLPRLVSIIIAGMSLSICGLIMQQISRNKFVSPTTA
GTMDWARLGILISLMLFTSASPLVKMSIAFVFALAGNFLFMKILERIKFNDAIFIPLVGLMLGNIVSSVATFIAYKYDLI
QNLSSWLQGDFSLVVKGRYELLYLSIPLVIIAYVYADKFTVAGMGESFSVNLGLKYKRVVNIGLIIVSLIASLVILTVGM
LPFLGLIIPNMVSIYKGDNLRSSLPHTALLGAVFVLFCDILGRVIIFPYEISIGLMVGVIGSGIFLYMLLRRKAYES

Nucleotide


Download         Length: 954 bp        

>NTDB_id=187450 A5891_RS02005 WP_032872883.1 400331..401284(+) (ceuB) [Bacillus velezensis strain S3-1]
ATGAAGCTACGTTACTTACTTTTGCTACTGGCGGTTTTGGCGTGTACTTCTATATTTATCGGTGTAGAAGATTTGTCGCC
GCTGGATATTTTTCATTTAAATAAAGAACAGGCAGGTACATTGTTTGACAGCCGGCTGCCGCGTTTGGTGAGCATTATCA
TCGCCGGCATGAGCCTGAGCATCTGCGGATTAATCATGCAGCAGATCAGCCGGAATAAATTTGTATCGCCGACGACTGCG
GGAACGATGGACTGGGCAAGGCTCGGAATTTTGATTTCATTAATGCTTTTTACATCAGCCAGTCCGCTTGTGAAAATGTC
TATCGCTTTCGTTTTCGCGTTGGCGGGAAATTTCCTGTTCATGAAAATTCTCGAGAGGATCAAGTTTAATGATGCGATTT
TTATTCCTCTCGTCGGTTTAATGCTTGGGAATATCGTCAGTTCAGTCGCCACGTTTATCGCATATAAATACGACCTGATC
CAAAACCTGTCGTCCTGGCTGCAGGGGGATTTCTCACTGGTCGTCAAAGGCCGGTATGAGCTTTTATATCTGAGTATCCC
GCTGGTGATCATCGCTTATGTGTATGCGGATAAATTTACGGTGGCGGGAATGGGAGAGAGCTTTTCCGTCAATCTCGGCC
TAAAATACAAACGCGTCGTCAATATCGGTCTGATTATCGTGTCGCTCATCGCTTCACTGGTGATCCTGACCGTCGGGATG
CTGCCGTTTCTTGGTTTGATCATTCCCAATATGGTGTCGATTTACAAAGGGGACAACCTGAGGAGCAGCCTGCCTCACAC
CGCTCTGCTGGGCGCTGTTTTTGTGCTGTTTTGCGACATTTTGGGAAGGGTGATCATCTTCCCGTACGAAATTTCCATCG
GCCTGATGGTCGGTGTTATCGGCAGCGGCATCTTCCTGTATATGCTGTTAAGGAGAAAAGCATATGAGTCATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

53.481

99.685

0.533

Multiple sequence alignment