Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   B6N50_RS09130 Genome accession   NZ_CP020543
Coordinates   1825099..1825575 (-) Length   158 a.a.
NCBI ID   WP_001186773.1    Uniprot ID   -
Organism   Escherichia coli C     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1820099..1830575
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B6N50_RS09085 (B6N50_09085) sbmC 1820592..1821065 (+) 474 WP_001105393.1 DNA gyrase inhibitor SbmC -
  B6N50_RS09090 (B6N50_09090) yeeA 1821263..1822321 (+) 1059 WP_001200905.1 FUSC family protein -
  B6N50_RS09095 (B6N50_09095) tmaR 1822493..1822822 (+) 330 WP_000450409.1 DUF496 family protein -
  B6N50_RS09100 (B6N50_09100) - 1822923..1823105 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  B6N50_RS09105 (B6N50_09105) - 1823168..1823305 (+) 138 Protein_1670 transposase domain-containing protein -
  B6N50_RS23605 - 1823594..1823686 (-) 93 Protein_1671 DUF957 domain-containing protein -
  B6N50_RS09110 (B6N50_09110) yeeW 1823720..1823914 (-) 195 WP_000988600.1 DUF5983 family protein -
  B6N50_RS09115 (B6N50_09115) cbtA 1823911..1824284 (-) 374 Protein_1673 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  B6N50_RS09120 (B6N50_09120) cbeA 1824373..1824741 (-) 369 WP_001285585.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  B6N50_RS09125 (B6N50_09125) yeeT 1824815..1825036 (-) 222 WP_000692323.1 DUF987 domain-containing protein -
  B6N50_RS09130 (B6N50_09130) radC 1825099..1825575 (-) 477 WP_001186773.1 JAB domain-containing protein Machinery gene
  B6N50_RS09135 (B6N50_09135) - 1825591..1825740 (-) 150 Protein_1677 antirestriction protein -
  B6N50_RS23610 - 1825736..1825855 (-) 120 Protein_1678 IS5/IS1182 family transposase -
  B6N50_RS09140 (B6N50_09140) - 1825926..1826384 (-) 459 Protein_1679 hypothetical protein -
  B6N50_RS09145 (B6N50_09145) - 1826520..1827590 (-) 1071 WP_000102643.1 patatin-like phospholipase family protein -
  B6N50_RS24115 - 1827587..1827655 (-) 69 Protein_1681 YjcZ-like family protein -
  B6N50_RS09150 (B6N50_09150) - 1827647..1828654 (+) 1008 Protein_1682 transposase -
  B6N50_RS09155 (B6N50_09155) - 1828664..1829153 (-) 490 Protein_1683 IS3 family transposase -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17688.29 Da        Isoelectric Point: 7.2020

>NTDB_id=187429 B6N50_RS09130 WP_001186773.1 1825099..1825575(-) (radC) [Escherichia coli C]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=187429 B6N50_RS09130 WP_001186773.1 1825099..1825575(-) (radC) [Escherichia coli C]
ATGCAACAACTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTACTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392

Multiple sequence alignment