Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   B6N50_RS00370 Genome accession   NZ_CP020543
Coordinates   68807..69475 (+) Length   222 a.a.
NCBI ID   WP_001297375.1    Uniprot ID   P65957
Organism   Escherichia coli C     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 63807..74475
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B6N50_RS00335 (B6N50_00335) yicC 63826..64689 (-) 864 WP_047402644.1 YicC/YloC family endoribonuclease -
  B6N50_RS00345 (B6N50_00345) rph 64816..65532 (+) 717 WP_001247089.1 ribonuclease PH -
  B6N50_RS00350 (B6N50_00350) pyrE 65598..66239 (+) 642 WP_000806177.1 orotate phosphoribosyltransferase -
  B6N50_RS00355 (B6N50_00355) slmA 66276..66872 (-) 597 WP_000818601.1 nucleoid occlusion factor SlmA -
  B6N50_RS00360 (B6N50_00360) dut 66979..67437 (-) 459 WP_000976070.1 dUTP diphosphatase -
  B6N50_RS00365 (B6N50_00365) coaBC 67415..68635 (-) 1221 WP_000050139.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  B6N50_RS00370 (B6N50_00370) radC 68807..69475 (+) 669 WP_001297375.1 RadC family protein Machinery gene
  B6N50_RS00375 (B6N50_00375) rpmB 69692..69928 (+) 237 WP_000091955.1 50S ribosomal protein L28 -
  B6N50_RS00380 (B6N50_00380) rpmG 69949..70116 (+) 168 WP_001051798.1 50S ribosomal protein L33 -
  B6N50_RS00385 (B6N50_00385) mutM 70214..71023 (+) 810 WP_001114533.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  B6N50_RS00390 (B6N50_00390) coaD 71062..71541 (-) 480 WP_001171873.1 pantetheine-phosphate adenylyltransferase -
  B6N50_RS00395 (B6N50_00395) waaA 71549..72826 (-) 1278 WP_000891562.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  B6N50_RS00400 (B6N50_00400) rfaQ 73239..74297 (+) 1059 WP_001514654.1 lipopolysaccharide core heptosyltransferase RfaQ -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25258.35 Da        Isoelectric Point: 7.9748

>NTDB_id=187396 B6N50_RS00370 WP_001297375.1 68807..69475(+) (radC) [Escherichia coli C]
MKNNAQLLMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQL
KGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHSRLFSGTLNHVEVHPREIIREAI
KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAERGWI

Nucleotide


Download         Length: 669 bp        

>NTDB_id=187396 B6N50_RS00370 WP_001297375.1 68807..69475(+) (radC) [Escherichia coli C]
GTGAAAAACAATGCACAGCTGTTGATGCCGCGCGAAAAAATGCTGAAGTTTGGTATTAGCGCCTTAACGGATGTCGAGCT
GCTGGCGCTATTTCTGCGTACCGGAACGCGCGGTAAAGATGTATTAACCCTGGCAAAAGAGATGCTGGAGAATTTCGGCT
CTCTTTATGGCTTGTTAACCTCTGAATATGAACAATTTAGTGGTGTTCATGGAATTGGCGTAGCGAAATTTGCCCAGTTA
AAGGGGATTGCTGAACTGGCGCGACGTTACTACAACGTGCGGATGCGTGAAGAAAGCCCTTTACTCAGCCCGGAGATGAC
GCGGGAATTTTTACAAAGCCAGCTCACGGGTGAGGAGCGGGAGATCTTTATGGTGATCTTTCTCGACTCACAACACCGGG
TTATAACGCATAGCCGTCTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGCGAAGCGATA
AAAATAAACGCCTCGGCGCTGATCCTTGCACATAATCACCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCAT
TACTGAACGGATAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAGAGTATG
TTTCTTTTGCCGAACGCGGCTGGATTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(103-220)

UPF0758 N-terminal (UPF0758_N)

(9-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P65957

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.55

100

0.496

Multiple sequence alignment