Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   BA894_RS16465 Genome accession   NZ_CP016352
Coordinates   145342..146439 (-) Length   365 a.a.
NCBI ID   WP_065297791.1    Uniprot ID   -
Organism   Vibrio natriegens strain CCUG 16374     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 140342..151439
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BA894_RS16450 (BA894_16450) - 141047..142105 (-) 1059 WP_065297789.1 HlyD family secretion protein -
  BA894_RS16455 (BA894_16455) - 142139..142594 (-) 456 WP_014233773.1 MarR family transcriptional regulator -
  BA894_RS16460 (BA894_16460) luxQ 142769..145342 (-) 2574 WP_065297790.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ -
  BA894_RS16465 (BA894_16465) luxP 145342..146439 (-) 1098 WP_065297791.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  BA894_RS16470 (BA894_16470) - 146735..147049 (-) 315 WP_014233770.1 GIY-YIG nuclease family protein -
  BA894_RS16475 (BA894_16475) - 147049..147693 (-) 645 WP_065297792.1 YceH family protein -
  BA894_RS16480 (BA894_16480) - 147851..148054 (-) 204 WP_014233768.1 hypothetical protein -
  BA894_RS16485 (BA894_16485) - 148446..148760 (+) 315 WP_014233767.1 DUF496 family protein -
  BA894_RS16490 (BA894_16490) - 148893..150230 (+) 1338 WP_065297793.1 MATE family efflux transporter -
  BA894_RS16495 (BA894_16495) - 150322..151305 (-) 984 WP_065297794.1 Gfo/Idh/MocA family protein -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 41605.94 Da        Isoelectric Point: 5.3280

>NTDB_id=187279 BA894_RS16465 WP_065297791.1 145342..146439(-) (luxP) [Vibrio natriegens strain CCUG 16374]
MKKELIFSLVLVAGIAPAAHPSQVLNGYWEYQEFLKEFPEQKQLTNALAEAVREKPIPVTSDKKRELKISVVYPGQQISD
YWIRNIDAFEKRLDKLNINYQLNQVFTRPNADIKQQSLSLMEALKSNSDYLIFTLDTTRHRKFIEHVLDSKKTKLILQNI
TTPVRDWDKHQPFLYVGFDHAEGSRKLAKEFSQRFPQNTHYSVLYFSEGYISDVRGNTFINQVNRDSNFELQSAYYTKAT
KQSGYEAAKASLDKYPDVDFIYACSTDVALGAVEALAELGRDDIMINGWGGGSAELDAILNGELDITVMRMNDDTGIAMA
EAIKWDLEGKSVPTVYSGDYEVVTTSDSPERIEALRKRAFRYSDN

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=187279 BA894_RS16465 WP_065297791.1 145342..146439(-) (luxP) [Vibrio natriegens strain CCUG 16374]
ATGAAAAAAGAGTTAATATTCTCCCTTGTATTAGTAGCTGGTATTGCCCCAGCAGCACATCCATCGCAAGTCCTGAATGG
ATATTGGGAATATCAAGAGTTTCTGAAAGAATTTCCGGAGCAAAAGCAACTAACCAACGCACTGGCTGAAGCTGTCAGAG
AAAAACCGATTCCGGTGACTAGCGATAAAAAGCGTGAACTGAAGATTTCTGTCGTTTACCCAGGGCAGCAAATCTCAGAT
TACTGGATCAGAAACATAGATGCTTTTGAAAAACGGTTAGATAAGCTAAATATTAACTATCAGCTCAATCAGGTTTTTAC
CCGTCCAAACGCCGATATCAAACAGCAAAGTCTGTCTTTAATGGAGGCTTTGAAAAGCAACTCGGACTATCTCATCTTTA
CGCTCGATACCACCAGACATCGCAAATTTATTGAGCATGTTTTAGATTCGAAGAAAACCAAACTGATCTTACAAAACATT
ACGACACCAGTAAGAGATTGGGATAAACATCAGCCGTTTCTTTATGTTGGTTTTGACCATGCTGAAGGCAGCAGAAAACT
GGCGAAAGAGTTTAGTCAACGCTTCCCCCAAAACACTCACTACAGTGTGCTTTACTTTTCAGAAGGCTACATTAGTGATG
TAAGAGGGAACACATTTATTAACCAGGTAAACCGTGACAGCAACTTTGAGCTACAATCTGCATATTACACCAAGGCGACA
AAGCAGTCTGGGTATGAGGCGGCAAAAGCCAGTCTGGACAAGTACCCTGATGTCGACTTTATTTATGCTTGCTCAACCGA
TGTCGCTCTTGGTGCCGTTGAAGCGCTAGCAGAACTCGGGCGCGATGATATTATGATTAATGGCTGGGGAGGGGGCTCTG
CAGAGCTAGACGCCATTTTAAATGGAGAGTTGGATATAACCGTCATGCGTATGAACGACGATACAGGTATTGCGATGGCA
GAAGCCATAAAGTGGGATCTGGAAGGGAAGTCAGTACCAACTGTATATTCTGGTGACTATGAAGTCGTCACCACATCAGA
TTCTCCCGAAAGAATAGAAGCCTTAAGAAAGCGCGCATTTAGATACTCAGATAATTGA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-324)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

64.286

99.726

0.641

Multiple sequence alignment