Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   BA894_RS10275 Genome accession   NZ_CP016351
Coordinates   2297939..2299300 (-) Length   453 a.a.
NCBI ID   WP_049794667.1    Uniprot ID   -
Organism   Vibrio natriegens strain CCUG 16374     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 2292939..2304300
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BA894_RS10240 (BA894_10240) moaE 2293497..2293952 (-) 456 WP_065297100.1 molybdopterin synthase catalytic subunit MoaE -
  BA894_RS10245 (BA894_10245) moaD 2293954..2294211 (-) 258 WP_065297101.1 molybdopterin synthase sulfur carrier subunit -
  BA894_RS10250 (BA894_10250) moaC 2294208..2294687 (-) 480 WP_014232530.1 cyclic pyranopterin monophosphate synthase MoaC -
  BA894_RS10255 (BA894_10255) moaB 2294715..2295227 (-) 513 WP_014232531.1 molybdenum cofactor biosynthesis protein B -
  BA894_RS10260 (BA894_10260) moaA 2295328..2296317 (-) 990 WP_065297102.1 GTP 3',8-cyclase MoaA -
  BA894_RS10265 (BA894_10265) - 2296624..2297514 (+) 891 WP_065297103.1 YvcK family protein -
  BA894_RS10270 (BA894_10270) luxU 2297598..2297942 (-) 345 WP_020335671.1 quorum-sensing phosphorelay protein LuxU -
  BA894_RS10275 (BA894_10275) luxO 2297939..2299300 (-) 1362 WP_049794667.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  BA894_RS10280 (BA894_10280) uvrB 2299631..2301661 (-) 2031 WP_065297104.1 excinuclease ABC subunit UvrB -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 50378.40 Da        Isoelectric Point: 6.0277

>NTDB_id=187255 BA894_RS10275 WP_049794667.1 2297939..2299300(-) (luxO) [Vibrio natriegens strain CCUG 16374]
MVEDTASVAALYRSYLTPLGIDINIVGTGRDAIESLKHRIPDLILLDLRLPDMTGMDVLHAVKQSHPDVPIIFMTAHGSI
DTAVEAMRHGSQDFLIKPCEADRLRVTVNNAIRKATKLKNEADNPGNQNYQGFIGSSQTMQQVYRTIDSAASSKASIFIT
GESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAANDRQGAAELADGGTLFLDELCEMDLD
LQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRERGEDVVEIAYSLLG
YMSHEEGKGFVRFSQEVIDRFNNYEWPGNVRQLQNVLRNIVVLNHGKEITLDMLPPPLNQPLERKTSSATVESQVMTASD
IVPLWITEKTAIERAIEACDGNIPRAAGYLDVSPSTIYRKLQAWNSKDERQKV

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=187255 BA894_RS10275 WP_049794667.1 2297939..2299300(-) (luxO) [Vibrio natriegens strain CCUG 16374]
ATGGTCGAGGATACTGCGTCGGTTGCGGCGTTGTATCGCTCTTACCTGACGCCACTAGGTATTGACATCAATATTGTCGG
TACCGGGCGTGATGCGATCGAAAGTCTGAAACACCGTATTCCCGACCTTATTCTGCTTGATCTTCGTCTGCCTGATATGA
CGGGTATGGACGTTCTGCATGCAGTGAAACAAAGTCATCCAGACGTTCCTATCATCTTTATGACTGCACACGGCTCTATC
GACACTGCGGTAGAAGCGATGCGTCATGGCTCTCAAGACTTTTTGATTAAACCGTGTGAAGCCGACCGCTTACGTGTCAC
GGTGAACAATGCGATACGAAAAGCGACCAAGTTAAAAAACGAAGCGGATAATCCCGGAAACCAGAATTATCAGGGTTTCA
TCGGTAGTAGCCAAACCATGCAGCAGGTTTACCGCACCATTGACTCAGCCGCGAGCAGTAAGGCGAGTATTTTCATTACT
GGTGAAAGTGGTACGGGTAAAGAGGTGTGTGCCGAAGCTATCCATGCCGCAAGTAAACGTGGTGACAAACCTTTTATTGC
GATTAACTGTGCAGCGATCCCGAAAGACCTGATTGAAAGTGAGTTGTTTGGTCACGTAAAAGGCGCATTCACTGGTGCGG
CGAATGATCGTCAAGGTGCGGCTGAATTAGCGGATGGCGGTACGCTTTTCCTCGATGAATTGTGTGAAATGGATTTGGAC
TTACAGACCAAGTTGTTGCGATTTATCCAGACTGGTACCTTCCAGAAAGTCGGCTCATCAAAAATGAAGAGCGTGGATGT
GCGCTTTGTGTGTGCCACCAACCGTGACCCTTGGAAAGAGGTTCAGGAAGGGCGCTTTCGTGAAGACCTATATTACCGCT
TATACGTAATACCATTGCATCTTCCACCTTTGCGTGAGCGTGGCGAAGACGTTGTCGAAATTGCTTACTCTTTATTGGGT
TATATGTCTCATGAAGAGGGAAAAGGTTTTGTACGCTTTTCGCAAGAAGTAATAGATCGATTCAATAACTATGAATGGCC
TGGTAACGTACGTCAGTTACAAAACGTGCTTCGCAATATCGTGGTGTTAAATCACGGTAAAGAAATTACTTTGGATATGC
TTCCGCCTCCATTGAATCAACCTTTGGAGCGTAAGACATCAAGCGCCACAGTTGAGTCTCAAGTGATGACAGCCTCGGAC
ATTGTGCCACTGTGGATTACGGAAAAAACGGCTATTGAACGCGCAATTGAAGCGTGTGACGGTAATATTCCTCGAGCAGC
AGGGTATCTAGATGTCAGCCCATCGACGATTTACCGTAAGCTACAAGCATGGAACAGCAAGGATGAGCGGCAAAAGGTAT
GA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(404-444)

Sigma-54 interaction domain (Sigma54_activat)

(134-299)

Response regulator receiver domain (Response_reg)

(2-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

86.83

98.896

0.859

Multiple sequence alignment