Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   A9P13_RS05925 Genome accession   NZ_CP020516
Coordinates   1147830..1148345 (+) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain 222     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1142830..1153345
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A9P13_RS05880 (A9P13_05880) csrA 1143583..1143768 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  A9P13_RS05910 (A9P13_05910) yqaB 1145060..1145626 (+) 567 WP_001521122.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  A9P13_RS05915 (A9P13_05915) yqaA 1145623..1146051 (+) 429 WP_001287454.1 YqaA family protein -
  A9P13_RS05920 (A9P13_05920) gshA 1146124..1147680 (+) 1557 WP_001521120.1 glutamate--cysteine ligase -
  A9P13_RS05925 (A9P13_05925) luxS 1147830..1148345 (+) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  A9P13_RS05930 (A9P13_05930) emrB 1148409..1149947 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  A9P13_RS05935 (A9P13_05935) emrA 1149964..1151136 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  A9P13_RS05940 (A9P13_05940) emrR 1151263..1151793 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  A9P13_RS05945 (A9P13_05945) ygaH 1151884..1152219 (-) 336 WP_000119745.1 L-valine transporter subunit YgaH -
  A9P13_RS05950 (A9P13_05950) ygaZ 1152209..1152946 (-) 738 WP_000445658.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=187253 A9P13_RS05925 WP_001130211.1 1147830..1148345(+) (luxS) [Escherichia coli strain 222]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=187253 A9P13_RS05925 WP_001130211.1 1147830..1148345(+) (luxS) [Escherichia coli strain 222]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTCGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCACAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731