Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   BA894_RS06930 Genome accession   NZ_CP016351
Coordinates   1537522..1538943 (-) Length   473 a.a.
NCBI ID   WP_065296719.1    Uniprot ID   -
Organism   Vibrio natriegens strain CCUG 16374     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1532522..1543943
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BA894_RS06905 (BA894_06905) - 1533127..1533777 (+) 651 WP_065296717.1 thiopurine S-methyltransferase -
  BA894_RS06910 (BA894_06910) purT 1533870..1535045 (-) 1176 WP_065296718.1 formate-dependent phosphoribosylglycinamide formyltransferase -
  BA894_RS06915 (BA894_06915) cdd 1535193..1536080 (-) 888 WP_014231624.1 cytidine deaminase -
  BA894_RS06920 (BA894_06920) - 1536410..1537087 (-) 678 WP_014231625.1 LrgB family protein -
  BA894_RS06925 (BA894_06925) - 1537089..1537463 (-) 375 WP_020333045.1 CidA/LrgA family protein -
  BA894_RS06930 (BA894_06930) sbcB 1537522..1538943 (-) 1422 WP_065296719.1 exodeoxyribonuclease I Machinery gene
  BA894_RS24770 - 1539182..1539352 (+) 171 WP_231119381.1 hypothetical protein -
  BA894_RS06935 (BA894_06935) - 1539520..1541286 (+) 1767 WP_065296720.1 hypothetical protein -
  BA894_RS06940 (BA894_06940) - 1541757..1542272 (+) 516 WP_065296721.1 hypothetical protein -
  BA894_RS06945 (BA894_06945) - 1542378..1543106 (+) 729 WP_065296722.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 54439.54 Da        Isoelectric Point: 4.7728

>NTDB_id=187251 BA894_RS06930 WP_065296719.1 1537522..1538943(-) (sbcB) [Vibrio natriegens strain CCUG 16374]
MHQDNQPTFFFFDYETWGTNPAKDRPSQFAGVRTDENFNIIGEPLVMYCQPPADYLPSPEAALITGITPQNAVQEGLPEP
EFIAKIHAELSKPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVLRACHALRPEGVEWPENEEGFP
SFKLEHLSVANGIEHSNAHDAMADVIATIEMAKKVKAAQPKLFDYFFSMRQKRKLNELVDIVNMTPLMHVSGMLGRECQY
TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSAEELHERLYTKREDLGDLLPVPVKLVHLNKCPILAPAKTLTAENAES
IGIDRQQCLNNLALLRQHPEIREKLISLFSVERTFEKSDDVDTQLYDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKR
IKPLLFRYRARNFPGTLDEQEQRRWAQHCREVFESQIEEYMLNLENLVHEHESDEKKIALLKSVYRYVESLAS

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=187251 BA894_RS06930 WP_065296719.1 1537522..1538943(-) (sbcB) [Vibrio natriegens strain CCUG 16374]
ATGCACCAAGATAATCAGCCCACTTTTTTCTTCTTTGACTACGAAACTTGGGGAACAAACCCTGCAAAAGATCGTCCGAG
TCAATTCGCTGGTGTTCGCACAGATGAAAATTTCAATATCATCGGCGAGCCTTTAGTTATGTATTGCCAGCCACCTGCTG
ATTACCTTCCTTCTCCTGAAGCTGCTTTAATTACTGGGATTACCCCACAAAACGCGGTGCAGGAAGGTCTGCCTGAGCCT
GAGTTCATTGCTAAAATTCATGCCGAGTTATCCAAACCAAATACTACCAGCTTGGGTTACAACAGTATTCGTTTTGATGA
TGAAGTGACGCGTTACACCTGTTACCGCAACTTCATTGACCCGTACGCGTGGAGTTGGCAGAACGGCAATTCGCGCTGGG
ATTTACTTGATGTGCTGCGCGCTTGTCATGCCCTTCGACCAGAAGGCGTTGAATGGCCAGAAAATGAAGAAGGCTTTCCT
AGCTTCAAACTTGAACATTTGTCTGTTGCCAATGGTATTGAACACAGCAATGCACACGATGCCATGGCTGACGTTATCGC
AACGATCGAGATGGCAAAGAAAGTTAAAGCCGCTCAGCCTAAGTTGTTCGATTACTTCTTCTCCATGCGTCAAAAGCGTA
AGCTGAATGAATTGGTTGATATCGTTAATATGACGCCTCTGATGCACGTTTCTGGCATGTTAGGACGTGAGTGTCAGTAC
ACAAGCTGGATTGTGCCTGTTGCATGGCATCCGACGAACAACAACGCGGTTATCACGATTGATTTAGCCAAAGATCCGCA
ACCAATCCTAGAGCTGTCTGCGGAAGAGCTGCACGAAAGGTTGTACACCAAGCGAGAAGATCTCGGTGATTTACTGCCTG
TGCCAGTTAAACTTGTTCACTTGAACAAGTGCCCTATTCTGGCACCAGCAAAAACACTGACGGCTGAAAACGCGGAGTCT
ATCGGCATTGACCGTCAGCAATGCTTGAACAATCTGGCTCTGTTGCGTCAGCACCCAGAGATTCGTGAAAAGCTGATCAG
CCTGTTTTCTGTTGAGCGCACATTTGAAAAAAGTGATGATGTGGATACTCAACTGTACGATGGCTTTTTCTCTCCGGCGG
ATCGCGCAGCGATGGATATTATTCGCGAGACCGACCCGAATAATCTGGCCGCTCTGGATATTGAGTTCGATGACAAGCGC
ATTAAACCACTGTTGTTCCGTTACCGTGCTCGAAACTTCCCTGGCACGCTAGACGAACAGGAACAAAGACGTTGGGCACA
GCACTGCCGTGAAGTGTTTGAAAGCCAAATCGAAGAGTATATGCTGAATTTAGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAAATAGCACTATTAAAATCCGTTTATCGTTACGTAGAGAGCCTAGCCTCTTAA

Domains

Predicted by InterproScan.

Exonuclease (RNase_T)

(11-190)

Exonuclease C-terminal (Exonuc_X-T_C)

(210-469)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

79.493

100

0.795

Multiple sequence alignment