Detailed information NTG0187250

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: A9P13_RS05620
• Genome accession: NZ_CP020516
• Coordinates: 1091070..1092062 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain 222
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1086070..1097062

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
A9P13_RS05590 (A9P13_05585)	ispD	1086131..1086841 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
A9P13_RS05595 (A9P13_05590)	ispF	1086841..1087320 (+)	480	WP_001521152.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
A9P13_RS05600 (A9P13_05595)	truD	1087317..1088366 (+)	1050	WP_000568924.1	tRNA pseudouridine(13) synthase TruD	-
A9P13_RS05605 (A9P13_05600)	surE	1088347..1089108 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
A9P13_RS05610 (A9P13_05605)	pcm	1089102..1089728 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
A9P13_RS05615 (A9P13_05610)	nlpD	1089913..1091007 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
A9P13_RS05620 (A9P13_05615)	rpoS	1091070..1092062 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
A9P13_RS05625 (A9P13_05620)	-	1092183..1092590 (-)	408	WP_001521151.1	MarR family transcriptional regulator	-
A9P13_RS05630 (A9P13_05625)	-	1092737..1093330 (+)	594	WP_001521150.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
A9P13_RS05635 (A9P13_05630)	-	1093330..1094757 (+)	1428	WP_000863205.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
A9P13_RS05640 (A9P13_05635)	-	1094768..1095004 (+)	237	WP_000562982.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
A9P13_RS05645 (A9P13_05640)	ygbN	1095043..1096407 (-)	1365	WP_000104455.1	GntP family transporter	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=187250 A9P13_RS05620 WP_000081550.1 1091070..1092062(+) (rpoS) [Escherichia coli strain 222]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=187250 A9P13_RS05620 WP_000081550.1 1091070..1092062(+) (rpoS) [Escherichia coli strain 222]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTTGCCTCCCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGCGAGTTGTCCCA
TAAACTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715