Detailed information NTG0187241

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: BA894_RS01770
• Genome accession: NZ_CP016351
• Coordinates: 393877..394884 (-)
• Length: 335 a.a.
• NCBI ID: WP_014230660.1
• Uniprot ID: -
• Organism: Vibrio natriegens strain CCUG 16374
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 388877..399884

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BA894_RS01740 (BA894_01740)	zapB	389001..389243 (+)	243	WP_014230654.1	cell division protein ZapB	-
BA894_RS01745 (BA894_01745)	rraA	389317..389859 (-)	543	WP_014230655.1	ribonuclease E activity regulator RraA	-
BA894_RS01750 (BA894_01750)	-	389936..390853 (-)	918	WP_065296275.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
BA894_RS01755 (BA894_01755)	hslU	391109..392440 (-)	1332	WP_014230657.1	HslU--HslV peptidase ATPase subunit	-
BA894_RS01760 (BA894_01760)	hslV	392464..393015 (-)	552	WP_014230658.1	ATP-dependent protease subunit HslV	-
BA894_RS01765 (BA894_01765)	-	393170..393715 (-)	546	WP_065297623.1	SPOR domain-containing protein	-
BA894_RS01770 (BA894_01770)	cytR	393877..394884 (-)	1008	WP_014230660.1	DNA-binding transcriptional regulator CytR	Regulator
BA894_RS01775 (BA894_01775)	priA	395220..397424 (-)	2205	WP_065296276.1	primosomal protein N'	-
BA894_RS01780 (BA894_01780)	rpmE	397722..397943 (+)	222	WP_014230662.1	50S ribosomal protein L31	-
BA894_RS01785 (BA894_01785)	rpsJ	398402..398713 (+)	312	WP_004410492.1	30S ribosomal protein S10	-
BA894_RS01790 (BA894_01790)	rplC	398728..399357 (+)	630	WP_014230663.1	50S ribosomal protein L3	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 36842.30 Da
• Isoelectric Point: 6.2447

>NTDB_id=187241 BA894_RS01770 WP_014230660.1 393877..394884(-) (cytR) [Vibrio natriegens strain CCUG 16374]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEDAVLEAGYSPNSLARNLRRNESKTIVTIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQLGHKRIAQISGPDTAVLCQFRQQGYQQALRRAGINKDPQYSIVTEFSFDGGAKAVRKLLELAEPPTA
IFCHCDTMAIGAIQEAKKLGFRVPQDLSVVGFDDINFAQYCDPPLTTISQPRYEIGRQAMLMMLELLKGHDVHSGSRLLE
TNLIVRGSAAPPQRA

Nucleotide

• Length: 1008 bp

>NTDB_id=187241 BA894_RS01770 WP_014230660.1 393877..394884(-) (cytR) [Vibrio natriegens strain CCUG 16374]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCGGGAGTATCTACCGCGACGGTATCTCGAGCATTAATGAATCCGGAGAA
AGTCTCCTCTTCAACCAGAAAAAGAGTGGAAGACGCGGTACTCGAAGCAGGTTACTCACCAAATTCATTAGCGCGTAATT
TACGACGAAATGAGTCGAAGACGATTGTTACGATCGTTCCTGACATCTGCGACCCTTACTTTTCCGAAATCATCCGTGGT
ATCGAAGATGCAGCGATGGAGCACGGCTACCTGGTTTTACTGGGAGACAGTGGCCAGCAGAAGAAACGCGAAAGCTCATT
CGTAAACTTGGTATTTACAAAGCAAGCAGACGGGATGCTGCTACTTGGTACTGACTTACCGTTTGATGTGAGTAAGCCAG
AGCAGAAAAACCTGCCACCAATGGTCATGGCGTGTGAATTTGCGCCTGAGCTGGAACTGCCAACCGTTCATATCGACAAC
CTGACTTCTGCCTTTGAAGCGGTCAATTATCTGACTCAGCTTGGCCACAAACGTATTGCGCAAATTTCAGGTCCTGATAC
CGCGGTATTGTGCCAATTCCGTCAACAAGGTTACCAGCAAGCACTGCGTCGTGCAGGGATCAATAAAGACCCGCAATACA
GTATTGTCACCGAGTTCTCTTTTGACGGCGGTGCAAAAGCAGTGCGTAAACTGCTGGAACTAGCGGAGCCACCAACCGCG
ATTTTCTGCCACTGTGACACGATGGCAATCGGCGCCATTCAAGAAGCGAAAAAACTCGGCTTCCGTGTACCACAAGATCT
ATCGGTCGTAGGTTTTGATGACATCAATTTCGCGCAGTACTGTGATCCACCGTTAACAACTATCTCTCAGCCTCGCTACG
AGATTGGCCGACAAGCGATGCTAATGATGTTAGAGCTTTTAAAAGGCCACGATGTGCATTCTGGATCTCGTCTCCTGGAG
ACTAACCTGATTGTGCGCGGAAGTGCTGCACCTCCTCAACGAGCGTAA

Domains

Predicted by InterproScan.

• Periplasmic binding protein-like domain (Peripla_BP_3) (168-328)

• Bacterial regulatory proteins, lacI family (LacI) (3-48)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	97.612	100	0.976
cytR	Vibrio cholerae C6706	89.222	99.701	0.89